{"id":"W4224883251","doi":"10.1016/j.celrep.2022.110731","title":"Type VI secretion systems of pathogenic and commensal bacteria mediate niche occupancy in the gut","year":2022,"lang":"en","type":"article","venue":"Cell Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Citrobacter rodentium; Biology; Microbiology; Type VI secretion system; Niche; Effector; Secretion; Escherichia coli; Pathogen; Pathogenic bacteria; Bacteria; Enterobacteriaceae; Ecology; Virulence; Cell biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006484109,0.00008041337,0.0001278233,0.00002863247,0.00007414404,0.00001330011,0.00009111987,0.00003885641,0.0000209925],"category_scores_gemma":[0.00009138844,0.0000629284,0.00002937252,0.00008930197,0.00004992188,0.000002071626,0.0002654479,0.00009231074,4.609708e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001432091,"about_ca_system_score_gemma":0.00006607679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000493461,"about_ca_topic_score_gemma":0.00001386234,"domain_scores_codex":[0.9990146,0.0002170142,0.0002426785,0.0002077763,0.0001656759,0.0001522456],"domain_scores_gemma":[0.9994437,0.00001907142,0.0001470502,0.0003158134,0.00004753204,0.00002683251],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005425534,0.00003253083,0.03498054,0.0000499409,0.00001557172,0.00009517166,0.0002691649,0.000007122409,0.9630616,0.000002575134,0.001350647,0.00008087232],"study_design_scores_gemma":[0.002028096,0.002828058,0.5469283,0.00006413012,0.0001139921,0.001387032,0.006549317,0.0001939389,0.1748052,0.0001342038,0.2640809,0.0008868848],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965854,0.002160032,0.000004310257,0.00004568591,0.0002942818,0.0002435326,0.00001665688,0.000003273827,0.0006467776],"genre_scores_gemma":[0.9991243,0.0003683756,0.00001453927,0.000039172,0.00006081059,0.00005310645,0.0001542364,0.000009303852,0.0001761968],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7882564,"threshold_uncertainty_score":0.2566145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01387569866435187,"score_gpt":0.2576375073111712,"score_spread":0.2437618086468194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}