{"id":"W4224883251","doi":"10.1016/j.celrep.2022.110731","title":"Type VI secretion systems of pathogenic and commensal bacteria mediate niche occupancy in the gut","year":2022,"lang":"en","type":"article","venue":"Cell Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Citrobacter rodentium; Biology; Microbiology; Type VI secretion system; Niche; Effector; Secretion; Escherichia coli; Pathogen; Pathogenic bacteria; Bacteria; Enterobacteriaceae; Ecology; Virulence; Cell biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002710621,0.0002664514,0.0002180885,0.0001947587,0.0001092584,0.0003750539,0.0001637282,0.0003593599,0.0004951535],"category_scores_gemma":[0.0002357421,0.0001073365,0.000255451,0.0001137472,0.0002190367,0.0003205622,0.0004056289,0.0002673189,0.0002358008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001802678,"about_ca_system_score_gemma":0.0001631102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001901403,"about_ca_topic_score_gemma":0.0001708827,"domain_scores_codex":[0.9997087,0.00005499884,0.00002134918,0.0000495722,0.00008903012,0.0000763608],"domain_scores_gemma":[0.9998692,0.000009550653,0.00003584794,0.0000127312,0.00002570993,0.00004681852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009632092,0.000007090946,0.001321107,0.00002933538,0.000002877438,0.00006358323,0.00002347029,0.0000225508,0.9969602,0.0001322747,0.00001255568,0.00132863],"study_design_scores_gemma":[0.00002331347,0.0008558823,0.05661518,0.00002214034,0.00002126192,0.001731738,0.0003271205,0.0009981098,0.9354721,0.0005261019,0.003391997,0.00001509943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922077,0.002341355,0.003601176,0.0001140554,0.00002970415,0.00001493564,0.0001126155,0.0000363685,0.001542089],"genre_scores_gemma":[0.996455,0.0005402276,0.002036397,0.00003975882,0.000008382492,0.000007902714,0.0001446099,0.000006165132,0.0007614894],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004951535,"threshold_uncertainty_score":0.001656473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01387569866435187,"score_gpt":0.2576375073111712,"score_spread":0.2437618086468194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}