{"id":"W4225256033","doi":"10.1126/sciadv.abi5075","title":"Genome evolution of a nonparasitic secondary heterotroph, the diatom<i>Nitzschia putrida</i>","year":2022,"lang":"en","type":"article","venue":"Science Advances","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Institute for Chemical Research, Kyoto University; Natural Environment Research Council; Directorate for Biological Sciences; Japan Society for the Promotion of Science; Agence Nationale de la Recherche; Biotechnology and Biological Sciences Research Council; University of East Anglia; Gatsby Charitable Foundation; Sight Research UK","keywords":"Phototroph; Photosynthesis; Biology; Diatom; Heterotroph; Nitzschia; Plastid; Algae; Secondary metabolism; Botany; Ecology; Gene; Phytoplankton; Genetics; Chloroplast; Bacteria; Nutrient","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005222263,0.0001230721,0.0001012786,0.0003157601,0.000182197,0.0002159566,0.0001062899,0.0002058503,0.0004095577],"category_scores_gemma":[0.0001256328,0.00009486848,0.0001390387,0.0002947429,0.0001109964,0.000118029,0.0001758748,0.0001959938,0.0001256325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002743744,"about_ca_system_score_gemma":0.00018302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001940627,"about_ca_topic_score_gemma":0.004101349,"domain_scores_codex":[0.9999589,0.000003782564,0.000002347313,0.0000213103,0.000007733565,0.000005905394],"domain_scores_gemma":[0.9999331,0.00001330951,0.00002100604,0.000005755226,0.000009178993,0.00001763163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002189887,0.00001790289,0.02276103,0.0001028915,0.00003391315,0.0001793356,0.000176241,0.0002205468,0.9690979,0.0002346669,0.00008367946,0.00687286],"study_design_scores_gemma":[0.00001651231,0.0002178045,0.9436637,0.00001687297,0.00009329017,0.001077429,0.0002621935,0.0012427,0.04625271,0.0002313865,0.006913428,0.00001198386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997399,0.0004328406,0.0004523301,0.0000343612,0.000004587649,0.000004135073,0.0009781396,0.00001361629,0.000680957],"genre_scores_gemma":[0.9943056,0.0003185657,0.001051213,0.00003659582,0.000003582342,0.000005966133,0.003558451,0.00000824174,0.0007119075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001940627,"threshold_uncertainty_score":0.003858626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004440320176174054,"score_gpt":0.2211805323532538,"score_spread":0.2167402121770798,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}