{"id":"W4225264672","doi":"10.1073/pnas.2108815119","title":"Revisiting the recombinant history of HIV-1 group M with dynamic network community detection","year":2022,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Medical Research Council; Ontario Genomics Institute; Government of Canada","keywords":"Genome; Biology; Recombination; Genetics; Computational biology; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002795222,0.0003607786,0.000515362,0.001533591,0.0005039676,0.0008294213,0.001131321,0.0006480356,0.000441618],"category_scores_gemma":[0.01036459,0.0003334164,0.0005896313,0.0009205022,0.00072961,0.001211873,0.001353985,0.0008360202,0.0001442593],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009865387,"about_ca_system_score_gemma":0.0007598693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00700831,"about_ca_topic_score_gemma":0.007877069,"domain_scores_codex":[0.9988142,0.000569204,0.00003834365,0.0003298,0.0001717715,0.00007665603],"domain_scores_gemma":[0.9961773,0.002104077,0.0006697562,0.000489167,0.0004003693,0.000159319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.0006161558,0.0002819489,0.1946466,0.000420819,0.0003655421,0.0003570329,0.001553421,0.525823,0.05034566,0.03419824,0.002015808,0.1893759],"study_design_scores_gemma":[0.000007106446,0.00002520893,0.006757626,0.000009065217,0.000008706235,0.00005721618,0.00005755977,0.9836013,0.001997161,0.006942945,0.0005214302,0.0000146298],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4779624,0.0002984205,0.5196354,0.000229411,0.00001833537,0.0001199683,0.0003325511,0.0002652885,0.001138182],"genre_scores_gemma":[0.8582355,0.00009273888,0.1405883,0.00005107027,0.00001479062,0.000075951,0.0005087638,0.00004216917,0.0003906907],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00700831,"threshold_uncertainty_score":0.01478273,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03189614982211429,"score_gpt":0.2711404300076645,"score_spread":0.2392442801855502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}