{"id":"W4225311763","doi":"10.1038/s41467-022-30048-6","title":"Metabolic preference assay for rapid diagnosis of bloodstream infections","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"University of Calgary; Alberta Innovates; Canadian Institutes of Health Research; Genome Canada; International Microbiome Centre, University of Calgary; Genome Alberta","keywords":"Antimicrobial; Septic shock; Medicine; Antibiotics; Bloodstream infection; Biology; Microbiology; Intensive care medicine; Internal medicine; Sepsis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004043045,0.00006953978,0.0001006193,0.00005215598,0.0004054553,0.00001457116,0.0006222557,0.00009557043,0.00007020508],"category_scores_gemma":[0.0008704131,0.00007773653,0.00009681346,0.0001962715,0.00006638939,0.000004027769,0.0004125081,0.0002471712,9.690409e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001010876,"about_ca_system_score_gemma":0.0000746946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002804055,"about_ca_topic_score_gemma":0.0002840349,"domain_scores_codex":[0.9992259,0.0002359991,0.000204055,0.0001694336,0.00007345387,0.00009118539],"domain_scores_gemma":[0.9982294,0.000166489,0.0001310361,0.001239532,0.0002032283,0.00003034849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003791341,0.00224864,0.1433619,0.00003857124,0.0002566209,5.110583e-8,0.0003079711,0.00008741942,0.7874179,0.02556248,0.01951198,0.02116847],"study_design_scores_gemma":[0.0004294028,0.0001957963,0.03466401,0.000005156667,0.00008704626,0.000004457441,0.0002199416,0.0001554806,0.07354738,0.000285165,0.8902314,0.000174732],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780182,0.01255092,0.0008405991,0.003053953,0.0005973819,0.001106134,0.001043562,0.0000684819,0.002720812],"genre_scores_gemma":[0.9934794,0.0005986631,0.003690281,0.0001423981,0.00004076681,0.0008245964,0.001026612,0.00001088899,0.0001864131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8707194,"threshold_uncertainty_score":0.3170004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03947850917688377,"score_gpt":0.3096968209461992,"score_spread":0.2702183117693154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}