{"id":"W4225330733","doi":"10.1099/mgen.0.000781","title":"An inventory of early branch points in microbial phosphonate biosynthesis","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Mutase; Biosynthesis; Phosphonate; Gene; Operon; Horizontal gene transfer; Biology; Enzyme; Biochemistry; Genome; Chemistry; Stereochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003182722,0.0005510387,0.0007956041,0.001817609,0.0005922816,0.001146257,0.0004310398,0.0005808256,0.002232176],"category_scores_gemma":[0.001297477,0.0003275072,0.001375132,0.00239307,0.0003520694,0.0009904145,0.0008344973,0.0004674514,0.001288504],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004959246,"about_ca_system_score_gemma":0.0006998182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00238718,"about_ca_topic_score_gemma":0.004250448,"domain_scores_codex":[0.9995242,0.00004480784,0.00002771299,0.0001770595,0.0001354215,0.00009069847],"domain_scores_gemma":[0.9994872,0.0001664367,0.00009160671,0.00005709408,0.00009859677,0.0000989771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002094164,0.0002780974,0.464904,0.002482973,0.0005253506,0.001172186,0.000711308,0.06700648,0.3011979,0.005099456,0.004736369,0.1497918],"study_design_scores_gemma":[0.0001213191,0.0013657,0.5826414,0.000371541,0.0009909687,0.003000651,0.001635619,0.2727068,0.0712558,0.01366587,0.05200851,0.0002359078],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845893,0.002745632,0.004704467,0.00007797153,0.0000148662,0.00001974615,0.004741087,0.0003938641,0.002713043],"genre_scores_gemma":[0.9459146,0.00379003,0.01739902,0.0001036125,0.0000220383,0.00007231774,0.03010219,0.0003000977,0.002296172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00238718,"threshold_uncertainty_score":0.00746733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009271039816025431,"score_gpt":0.2341320436444926,"score_spread":0.2248610038284671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}