{"id":"W4225472075","doi":"10.1101/2022.02.13.480274","title":"RNA triplex structures revealed by WAXS-driven MD simulations","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institutes of Health; New York University Abu Dhabi; York University; U.S. Department of Energy","keywords":"RNA; Molecular dynamics; Nucleic acid structure; Crystallography; Base pair; Scattering; Structural motif; Function (biology); Molecule; Biomolecular structure; Chemistry; Chemical physics; Biophysics; DNA; Protein structure; Physics; Biology; Computational chemistry; Genetics; Biochemistry; Optics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003233341,0.0004611638,0.0005591492,0.0003907074,0.0004940578,0.0005696944,0.00068029,0.0007665039,0.00182189],"category_scores_gemma":[0.0008903201,0.0003042998,0.0004248875,0.0003468362,0.0006061922,0.0005039734,0.0005892487,0.0007752839,0.000213092],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008219966,"about_ca_system_score_gemma":0.0009133944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005074429,"about_ca_topic_score_gemma":0.003262155,"domain_scores_codex":[0.9999012,0.00001980449,0.000004610703,0.00001271833,0.00003496018,0.00002676373],"domain_scores_gemma":[0.9997191,0.000124242,0.00002824213,0.00002886677,0.00005578332,0.00004374101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001339401,0.00008435177,0.001480996,0.00006395377,0.00005099354,0.000179606,0.0001045149,0.9781648,0.01077213,0.006286392,0.0005100009,0.002168349],"study_design_scores_gemma":[0.00001665822,0.00001565985,0.0001985062,0.000003588349,0.000002434282,0.000003453222,0.00001285788,0.9979334,0.001054066,0.0006120037,0.0001433265,0.000004175854],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9669266,0.000163653,0.02352688,0.000344586,0.00004593656,0.00007811165,0.0007853163,0.0003291852,0.007799588],"genre_scores_gemma":[0.9836327,0.0001402717,0.014206,0.00006640868,0.00001300924,0.0001645626,0.0006393198,0.0001086205,0.001029082],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005074429,"threshold_uncertainty_score":0.01008981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01228314278790825,"score_gpt":0.2315086180194741,"score_spread":0.2192254752315659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}