{"id":"W4225484922","doi":"10.1186/s12941-021-00489-w","title":"Successful treatment of a kidney transplant patient with COVID-19 and late-onset Pneumocystis jirovecii pneumonia","year":2021,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Mega Project on Major Infectious Disease Prevention; Tongji University; Huazhong University of Science and Technology","keywords":"Pneumocystis jirovecii; Medical microbiology; Medicine; Pneumonia; Coronavirus disease 2019 (COVID-19); Pneumocystis pneumonia; Parasitology; Intensive care medicine; Kidney transplantation; Virology; Internal medicine; Immunology; Kidney; Pathology; Infectious disease (medical specialty); Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003209678,0.0003852388,0.001749951,0.0001378451,0.0001206698,0.00001444836,0.00006829676,0.0003614772,0.0001073007],"category_scores_gemma":[0.0005268151,0.0002750191,0.0003156803,0.0001943125,0.0008500929,0.00005698864,0.00005242094,0.0001777694,0.000005987664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000177977,"about_ca_system_score_gemma":0.0007228469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008966981,"about_ca_topic_score_gemma":0.0000661718,"domain_scores_codex":[0.9970301,0.0003958723,0.001371747,0.0007375102,0.00007554302,0.0003892114],"domain_scores_gemma":[0.9972085,0.0007862999,0.0005632479,0.0003956645,0.0002374615,0.0008087702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003330133,0.002553978,0.2053302,0.0004876204,0.001211995,0.001023723,0.0004296763,0.000005428474,0.7788517,0.00003224782,0.0005538556,0.006189424],"study_design_scores_gemma":[0.01231153,0.0131785,0.09976733,0.0007656511,0.001067178,0.01292736,0.000146107,0.00001213049,0.8192251,0.0001087027,0.03990416,0.0005862562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849699,0.001176594,0.0000347624,0.01165769,0.0001542165,0.0004815714,0.001360446,0.00003596452,0.0001288767],"genre_scores_gemma":[0.9808775,0.0113811,0.0004077903,0.006766185,0.00003603332,0.00001427759,0.0002580311,0.00002590294,0.0002331682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1055629,"threshold_uncertainty_score":0.9999702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06304140139475198,"score_gpt":0.3675981950729093,"score_spread":0.3045567936781572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}