{"id":"W4225484922","doi":"10.1186/s12941-021-00489-w","title":"Successful treatment of a kidney transplant patient with COVID-19 and late-onset Pneumocystis jirovecii pneumonia","year":2021,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Mega Project on Major Infectious Disease Prevention; Tongji University; Huazhong University of Science and Technology","keywords":"Pneumocystis jirovecii; Medical microbiology; Medicine; Pneumonia; Coronavirus disease 2019 (COVID-19); Pneumocystis pneumonia; Parasitology; Intensive care medicine; Kidney transplantation; Virology; Internal medicine; Immunology; Kidney; Pathology; Infectious disease (medical specialty); Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002679014,0.000861455,0.001105611,0.0007022574,0.002166291,0.0008579241,0.0008234783,0.002859515,0.0006935106],"category_scores_gemma":[0.001151208,0.0003143762,0.0009568803,0.0004000041,0.0006122797,0.001018499,0.001283012,0.002548309,0.0003244962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007265779,"about_ca_system_score_gemma":0.0012099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008026708,"about_ca_topic_score_gemma":0.001491046,"domain_scores_codex":[0.9997208,0.00003667385,0.00003381526,0.00004469752,0.00004816606,0.0001159031],"domain_scores_gemma":[0.9994103,0.00007093816,0.00007797886,0.00002855215,0.00004292649,0.0003693533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.0001512874,0.0002976604,0.0160006,0.00008175045,0.00003171897,0.9699835,0.0002629416,0.0003086798,0.002701126,0.0002207664,0.0008158351,0.009144273],"study_design_scores_gemma":[0.00006695296,0.0007690861,0.02029264,0.00008703363,0.00004613051,0.9719088,0.0002971095,0.001196545,0.002191169,0.0004695217,0.00263897,0.00003596587],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9603115,0.01148845,0.01013185,0.00729282,0.001299923,0.0003480669,0.0001729787,0.0002981761,0.00865624],"genre_scores_gemma":[0.9919142,0.002090839,0.001854482,0.001906092,0.0008173136,0.00004345932,0.0001564374,0.00002156656,0.001195698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002859515,"threshold_uncertainty_score":0.005271733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06304140139475198,"score_gpt":0.3675981950729093,"score_spread":0.3045567936781572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}