{"id":"W4225633502","doi":"10.1111/mec.16468","title":"Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs ( <i>Coregonus</i> sp.) with long and short reads","year":2022,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Université Laval","keywords":"Biology; Coregonus clupeaformis; Genome; Sympatric speciation; Genetics; Genetic architecture; Evolutionary biology; Single-nucleotide polymorphism; Genotype; Quantitative trait locus; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003538602,0.0003448751,0.0003668463,0.001173554,0.0004689922,0.0005461091,0.0002541229,0.0003348706,0.0009969097],"category_scores_gemma":[0.0009630041,0.0003006095,0.0007409189,0.00147333,0.0002409204,0.0002875896,0.0005404179,0.0004918885,0.0003254818],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004750576,"about_ca_system_score_gemma":0.0005705612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009696738,"about_ca_topic_score_gemma":0.02499759,"domain_scores_codex":[0.9996998,0.00002479457,0.00002537348,0.0001650481,0.00005133562,0.00003363624],"domain_scores_gemma":[0.999637,0.00008057303,0.0000901344,0.00005206991,0.00009122287,0.00004899078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000696986,0.00004898008,0.1059368,0.0007097453,0.0003693202,0.0004574893,0.001865893,0.002700421,0.8496529,0.0008946951,0.001383971,0.03528287],"study_design_scores_gemma":[0.00004576662,0.000217108,0.9247565,0.000102993,0.0003882891,0.0005751043,0.0007177829,0.008297008,0.0422312,0.0007364476,0.02186571,0.00006611293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9767237,0.0005499199,0.008924698,0.00007128436,0.00002129997,0.00004308764,0.01190905,0.000281693,0.001475169],"genre_scores_gemma":[0.8971308,0.0004175175,0.04137027,0.0001405115,0.00001230991,0.0001508565,0.05845862,0.0003655303,0.001953596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009696738,"threshold_uncertainty_score":0.01928061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006763666940115871,"score_gpt":0.1939204253490324,"score_spread":0.1871567584089165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}