{"id":"W4225633502","doi":"10.1111/mec.16468","title":"Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs ( <i>Coregonus</i> sp.) with long and short reads","year":2022,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Université Laval","keywords":"Biology; Coregonus clupeaformis; Genome; Sympatric speciation; Genetics; Genetic architecture; Evolutionary biology; Single-nucleotide polymorphism; Genotype; Quantitative trait locus; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007988457,0.0002078575,0.0002237411,0.00007548859,0.0003242306,0.00005068603,0.0001604775,0.0001428239,0.000126911],"category_scores_gemma":[0.00001254523,0.0002122062,0.00004273844,0.0001004529,0.000120628,0.000006288431,0.00039687,0.0001566626,7.686198e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001802638,"about_ca_system_score_gemma":0.00003615346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001305298,"about_ca_topic_score_gemma":0.0005187378,"domain_scores_codex":[0.9986934,0.0001614415,0.000185182,0.0004949294,0.0001792017,0.0002858399],"domain_scores_gemma":[0.9994978,0.000009866501,0.0000842368,0.0002545091,0.00005094182,0.0001025967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005318883,0.00001048015,0.9257908,0.00001705069,0.0001436326,0.00006818923,0.000106671,0.0005977541,0.07265686,0.00005386411,0.00006719701,0.000434285],"study_design_scores_gemma":[0.0005168237,0.0004236138,0.9943336,0.000001503797,0.0001219281,0.0002969373,0.00009935263,0.00004141021,0.002182322,0.00009648454,0.00162575,0.0002602491],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968001,0.0002864648,0.001973157,0.0001660738,0.000135676,0.0002568947,0.0001410034,0.00001477894,0.0002258076],"genre_scores_gemma":[0.9976594,0.00004486763,0.0007184591,0.000221385,0.00008650057,0.00001661318,0.0009794876,0.00002386165,0.0002493511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07047454,"threshold_uncertainty_score":0.8653516,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006763666940115871,"score_gpt":0.1939204253490324,"score_spread":0.1871567584089165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}