{"id":"W4225875717","doi":"10.1093/ofid/ofac083","title":"Pathogen Species Is Associated With Mortality in Nosocomial Bloodstream Infection in Patients With COVID-19","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Antibiotic Use and Resistance","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Center for Chronic Disease Prevention and Health Promotion; NYU Grossman School of Medicine; Genentech; Centers for Disease Control and Prevention; Janssen Biotech; York University; Regeneron Pharmaceuticals; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Pfizer","keywords":"Medicine; Pneumonia; Pandemic; Enterococcus; Epidemiology; Retrospective cohort study; Mortality rate; Pathogen; Internal medicine; Coronavirus disease 2019 (COVID-19); Disease; Antibiotics; Immunology; Infectious disease (medical specialty); Microbiology; Biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000148174,0.000202732,0.0003519022,0.0001518955,0.0005016801,0.00004653005,0.0002149767,0.00009152927,0.001243345],"category_scores_gemma":[0.00009727231,0.0001648744,0.00005479101,0.0004892192,0.0001683493,0.0001900926,0.0002758193,0.000276566,0.00001845495],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004076794,"about_ca_system_score_gemma":0.0003363735,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005423788,"about_ca_topic_score_gemma":0.02208713,"domain_scores_codex":[0.9985342,0.000337778,0.0002517822,0.0003973313,0.00009336413,0.0003855394],"domain_scores_gemma":[0.9993782,0.00008679958,0.0001945833,0.0002473234,0.00004102571,0.00005204101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006798938,0.002437907,0.9940449,0.00001565213,0.0002146994,0.00003539438,0.000220758,0.000208973,0.00005285883,0.0001742016,0.001842527,0.00007224308],"study_design_scores_gemma":[0.007198942,0.0008664234,0.9883578,0.00003885517,0.000086691,0.000005409883,0.0002293997,0.000001158586,0.00008499168,0.0001833571,0.002684614,0.0002623497],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954383,0.0001061978,0.000009212246,0.0001324968,0.0001640618,0.0009301638,0.0007633454,0.00005958921,0.002396663],"genre_scores_gemma":[0.9975404,0.00001963675,0.000001297389,0.0008383961,0.000005808453,0.0001061992,0.0008037066,0.00002075217,0.00066383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01666334,"threshold_uncertainty_score":0.9996697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01029945182982588,"score_gpt":0.2439563193759332,"score_spread":0.2336568675461073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}