{"id":"W4225912310","doi":"10.1128/msystems.01092-21","title":"DNA Methylation in <i>Ensifer</i> Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with <i>Medicago</i> spp.","year":2022,"lang":"en","type":"article","venue":"mSystems","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell’Istruzione, dell’Università e della Ricerca; Office of Science; Agence Nationale de la Recherche; Government of Canada; Joint Genome Institute; U.S. Department of Energy; European Molecular Biology Organization; Teagasc","keywords":"DNA methylation; Methylation; Epigenetics; Transcriptome; Symbiosis; Rhizobia; Cell cycle; RNA-Directed DNA Methylation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000777131,0.0001741005,0.000181448,0.0004798227,0.0003859048,0.0002590088,0.0001696173,0.0002291293,0.001353836],"category_scores_gemma":[0.0001758576,0.0001453461,0.0001204841,0.0002686332,0.0002394653,0.0002244151,0.0002506762,0.000220972,0.0002500942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004224978,"about_ca_system_score_gemma":0.0002598649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008685177,"about_ca_topic_score_gemma":0.02067289,"domain_scores_codex":[0.9999079,0.000007592281,0.000003947152,0.00004945315,0.000009364895,0.00002171972],"domain_scores_gemma":[0.9998292,0.00002153076,0.000050878,0.00001406173,0.00003542736,0.00004895666],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001847001,0.000008187418,0.00723792,0.00002415021,0.000008928278,0.00002131129,0.0001625549,0.00001874994,0.9912311,0.00004315526,0.00001767201,0.001041565],"study_design_scores_gemma":[0.00001235501,0.0003249925,0.8498685,0.00001251406,0.00004753492,0.0001903783,0.0006785291,0.0004649543,0.1451784,0.0001585734,0.003043083,0.00002017196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978593,0.0002488775,0.0002963631,0.00001743499,0.000004421894,0.000006119492,0.0007246956,0.00001692596,0.0008257902],"genre_scores_gemma":[0.9961004,0.0001042989,0.0003129698,0.00003053462,0.000002347998,0.00001577753,0.001321469,0.00001146209,0.002100716],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008685177,"threshold_uncertainty_score":0.01726925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008274141700970482,"score_gpt":0.1722930425930041,"score_spread":0.1640189008920336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}