{"id":"W4225912310","doi":"10.1128/msystems.01092-21","title":"DNA Methylation in <i>Ensifer</i> Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with <i>Medicago</i> spp.","year":2022,"lang":"en","type":"article","venue":"mSystems","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell’Istruzione, dell’Università e della Ricerca; Office of Science; Agence Nationale de la Recherche; Government of Canada; Joint Genome Institute; U.S. Department of Energy; European Molecular Biology Organization; Teagasc","keywords":"DNA methylation; Methylation; Epigenetics; Transcriptome; Symbiosis; Rhizobia; Cell cycle; RNA-Directed DNA Methylation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000524609,0.0002643156,0.0003706722,0.00007425492,0.0007581188,0.0001236157,0.0003745057,0.00007703214,0.0001516838],"category_scores_gemma":[0.0001065559,0.000132764,0.00007889543,0.0008375605,0.00007299631,0.0002307374,0.0004688098,0.0003094684,0.000006307527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001654638,"about_ca_system_score_gemma":0.00001155349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001258882,"about_ca_topic_score_gemma":0.0008114126,"domain_scores_codex":[0.9975311,0.0003132769,0.0004293748,0.0005756015,0.0006227699,0.0005279238],"domain_scores_gemma":[0.9992089,0.0002770326,0.0002031404,0.0001403855,0.00003773285,0.0001328119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002714673,0.00003782627,0.3332406,0.0000607734,0.00002371401,0.00003042754,0.0003959694,0.000001754375,0.666068,0.00003993245,0.00003506445,0.0000388675],"study_design_scores_gemma":[0.0009206329,0.000255849,0.5870008,0.0003582705,0.00004996989,0.0003344267,0.005480103,0.00003345405,0.4044287,0.0001247248,0.0002577306,0.0007552949],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997438,0.0005532987,4.295084e-7,0.0005876369,0.0001706156,0.0003708671,0.00004855552,0.0001611209,0.0006695232],"genre_scores_gemma":[0.999311,0.0000149665,0.00003980476,0.00009017478,0.0002770482,0.0001086046,0.00001714423,0.000006716058,0.0001345527],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2616392,"threshold_uncertainty_score":0.5830913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008274141700970482,"score_gpt":0.1722930425930041,"score_spread":0.1640189008920336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}