{"id":"W4226124297","doi":"10.2196/35706","title":"An Agreement of Antigen Tests on Oral Pharyngeal Swabs or Less Invasive Testing With Reverse Transcription Polymerase Chain Reaction for Detecting SARS-CoV-2 in Adults: Protocol for a Prospective Nationwide Observational Study","year":2022,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Medicine; Gold standard (test); Polymerase chain reaction; Observational study; Real-time polymerase chain reaction; Reverse transcription polymerase chain reaction; Saliva; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Retrospective cohort study; Reverse transcriptase; Prospective cohort study; Internal medicine; Virology; Pathology; Coronavirus disease 2019 (COVID-19); Biology; Disease; Infectious disease (medical specialty); Messenger RNA","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003438179,0.0002806787,0.0004414266,0.0008395549,0.0007110765,0.00006047299,0.0002221175,0.00008035803,0.00001053967],"category_scores_gemma":[0.002814094,0.0002402566,0.00008096308,0.001808375,0.00008934209,0.0004397962,0.00005889898,0.0007342286,9.573657e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008203368,"about_ca_system_score_gemma":0.00110329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006620688,"about_ca_topic_score_gemma":0.002332893,"domain_scores_codex":[0.9958091,0.0006312644,0.0007892489,0.0008107514,0.001369935,0.0005897488],"domain_scores_gemma":[0.9963999,0.001181426,0.0004401653,0.0003730794,0.001531591,0.0000738103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.05327772,0.006229682,0.1060767,0.00174226,0.00005655433,0.00004593141,0.002612112,0.0000379864,0.8198127,0.00003193125,0.00006459849,0.01001177],"study_design_scores_gemma":[0.04333411,0.06781965,0.07769211,0.004863371,0.00001307072,0.00005186771,0.008695833,0.005201319,0.7908146,0.0001496975,0.0009836679,0.0003806649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.4563563,1.556279e-7,0.0001004508,0.00008060569,0.000005383935,0.5433246,0.00003174406,0.00005993001,0.00004075066],"genre_scores_gemma":[0.3251606,8.225104e-9,0.002337946,0.0001251897,0.00009684954,0.6721907,0.00001909481,0.00004816702,0.00002140335],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.1311957,"threshold_uncertainty_score":0.9797381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.539668348601717,"score_gpt":0.5522397254608311,"score_spread":0.01257137685911414,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}