{"id":"W4226188178","doi":"10.1099/mgen.0.000810","title":"Early branching arbuscular mycorrhizal fungus Paraglomus occultum carries a small and repeat-poor genome compared to relatives in the Glomeromycotina","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; The Scarborough Hospital; University of Ottawa","funders":"","keywords":"Biology; Obligate; Genome; Phylogenetic tree; Genome size; Gene; Comparative genomics; Phylogenetics; Gene family; Genetics; Evolutionary biology; Most recent common ancestor; Genomics; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004252288,0.0002785707,0.0002163476,0.0004273953,0.0002095809,0.0002743003,0.0001822484,0.000195681,0.001134903],"category_scores_gemma":[0.0002124467,0.00009964922,0.0001614791,0.0004128026,0.0001436029,0.0001928123,0.0002471732,0.0002961248,0.0003769509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001365249,"about_ca_system_score_gemma":0.000184419,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001072444,"about_ca_topic_score_gemma":0.002474695,"domain_scores_codex":[0.9999398,0.000003918077,0.000002819661,0.00002486325,0.00001479456,0.00001378803],"domain_scores_gemma":[0.9998145,0.00004949232,0.00005843712,0.00002254344,0.0000154688,0.0000396822],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002488617,0.00002201189,0.01628666,0.0001282472,0.00002024796,0.0003523588,0.0001109215,0.00008750193,0.9736083,0.0001173846,0.00005240738,0.008965202],"study_design_scores_gemma":[0.00002016175,0.0003071801,0.8385946,0.00003135278,0.0001030967,0.003505252,0.0003860421,0.001058098,0.1473697,0.0003250599,0.008279674,0.0000197542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966733,0.0005045968,0.0009414806,0.00002640649,0.000003354069,0.000005803967,0.001240249,0.00005589998,0.0005488275],"genre_scores_gemma":[0.9920114,0.0002993943,0.002696204,0.00002685365,0.000006536007,0.00001477469,0.004113143,0.00002173763,0.0008099459],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001134903,"threshold_uncertainty_score":0.003796637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01240204548225475,"score_gpt":0.1874087034837361,"score_spread":0.1750066580014814,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}