{"id":"W4226281387","doi":"10.22215/etd/2022-14895","title":"Genomically Informed Custom Selective Enrichment of Shiga-toxigenic E. coli (STEC) outbreak strains in foods","year":2022,"lang":"en","type":"dissertation","venue":"","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Canadian Food Inspection Agency","keywords":"Outbreak; Antibiotic resistance; Escherichia coli; Foodborne pathogen; Biology; Microbiology; Biotechnology; Antibiotics; Listeria monocytogenes; Bacteria; Virology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003296948,0.0004057039,0.0003500391,0.0002735312,0.0001884412,0.0004991248,0.0002243905,0.0003307015,0.001162471],"category_scores_gemma":[0.0004546419,0.0002167862,0.00025067,0.0002558225,0.0001949683,0.000182636,0.0006914044,0.0004720393,0.0008086247],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002076565,"about_ca_system_score_gemma":0.0002424523,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008610393,"about_ca_topic_score_gemma":0.002568388,"domain_scores_codex":[0.9997033,0.00003567469,0.00001940251,0.00008063619,0.0001004522,0.00006037643],"domain_scores_gemma":[0.999837,0.0000314438,0.00004157539,0.00002625768,0.00004362926,0.00002004045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002762507,0.00002554485,0.0003852307,0.00002345442,0.00000258694,0.00001746157,0.00001727055,0.0001610738,0.9959641,0.00001761211,0.00004787627,0.003310117],"study_design_scores_gemma":[0.000003519637,0.0001688481,0.004915134,0.00001036142,0.00001789123,0.0001002949,0.00007741718,0.001031582,0.9915872,0.00002574279,0.002053968,0.000008010745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9752323,0.0004928109,0.01967965,0.00021702,0.00003631929,0.0001364406,0.0008585792,0.0003406408,0.003006337],"genre_scores_gemma":[0.9459475,0.001184221,0.04130167,0.0003006647,0.00001746699,0.0001397377,0.002808826,0.0001759684,0.008123985],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001162471,"threshold_uncertainty_score":0.003888845,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01188809959561829,"score_gpt":0.310558818820984,"score_spread":0.2986707192253657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}