{"id":"W4226293772","doi":"10.1186/s40168-022-01247-6","title":"Gut microbiome signatures linked to HIV-1 reservoir size and viremia control","year":2022,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; Institut d’Investigacions Biomèdiques August Pi i Sunyer, Universitat de Barcelona; Medical Research Council; Instituto de Salud Carlos III; National Institute for Health and Care Research; Canadian Institutes of Health Research; Horizon 2020 Framework Programme; National Institutes of Health; Ministerio de Ciencia, Innovación y Universidades","keywords":"Biology; Microbiome; Clostridiales; Metabolome; Viremia; Gut flora; Immunology; Immune system; Metagenomics; Microbiology; Clostridium; Bioinformatics; Genetics; Metabolomics; Bacteria; Human immunodeficiency virus (HIV); Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003911594,0.00030043,0.0003287164,0.0001595064,0.0004580202,0.00005874507,0.0004112095,0.0002008178,0.0002845033],"category_scores_gemma":[0.00005238914,0.0003167318,0.0001236963,0.0003030029,0.0001061013,0.000004908527,0.0006180624,0.0003095542,0.00007363236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008809836,"about_ca_system_score_gemma":0.0001467501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005067338,"about_ca_topic_score_gemma":0.00003293854,"domain_scores_codex":[0.9980145,0.0001775546,0.0003545947,0.0007353853,0.0001039414,0.0006140409],"domain_scores_gemma":[0.9990231,0.00003604191,0.0001071503,0.0005314584,0.00007543476,0.0002268503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002717811,0.00008209062,0.0002595403,0.00004054812,0.00005515191,0.00001250197,0.0001258721,0.00005792363,0.9196238,0.00002000612,0.07929578,0.0001550448],"study_design_scores_gemma":[0.00272865,0.0006983739,0.01483187,0.00001962213,0.00003756459,0.000189382,0.0001474596,0.000006770445,0.06363126,0.00002096016,0.9170623,0.0006258098],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920442,0.002100598,0.0001490373,0.003283025,0.0003333249,0.0006569832,0.001130409,0.00004290694,0.0002595081],"genre_scores_gemma":[0.9854454,0.00004770593,0.001030812,0.007517762,0.0002190627,0.00006736365,0.0004450021,0.00006004857,0.005166857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8559925,"threshold_uncertainty_score":0.9999285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004822219270955365,"score_gpt":0.2333599994781005,"score_spread":0.2285377802071451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}