{"id":"W4226315046","doi":"10.5858/arpa.2021-0630-sa","title":"The Role of Subgenomic RNA in Discordant Results From Reverse Transcription-Polymerase Chain Reaction Tests for COVID-19","year":2022,"lang":"en","type":"article","venue":"Archives of Pathology & Laboratory Medicine","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; University of Calgary","funders":"","keywords":"Subgenomic mRNA; Biology; Polymerase chain reaction; Virology; Reverse transcription polymerase chain reaction; Gene; Infectivity; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Molecular biology; Real-time polymerase chain reaction; RNA; Reverse transcriptase; Coronavirus disease 2019 (COVID-19); Gene expression; Virus; Genetics; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001035184,0.000149695,0.0004291011,0.0003028791,0.0002053437,0.000001409812,0.0001512104,0.00003702833,0.00001317607],"category_scores_gemma":[0.002825446,0.0001161001,0.00007555234,0.0003674712,0.0005703167,0.0000360138,0.00003860315,0.0003408528,6.513328e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000805711,"about_ca_system_score_gemma":0.0003782517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008980182,"about_ca_topic_score_gemma":0.0005188957,"domain_scores_codex":[0.9980854,0.0004127436,0.0007327843,0.0003436072,0.0002008639,0.0002246355],"domain_scores_gemma":[0.9968852,0.002145129,0.000416445,0.000413151,0.00004987931,0.00009018418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003395644,0.0001401274,0.002726323,0.00003721073,0.00003407147,0.0001394332,0.005862054,0.00001083564,0.9827487,0.0003495952,0.0001101678,0.00444585],"study_design_scores_gemma":[0.0223773,0.003733196,0.03169599,0.0002770418,0.0003449744,0.000283363,0.02614604,0.001469371,0.8636292,0.006110046,0.04361906,0.0003144086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929062,0.002147863,0.0002033938,0.002865883,0.0003767246,0.0005916173,0.000526629,0.00003758549,0.0003441412],"genre_scores_gemma":[0.9972702,0.0001019336,0.0005798936,0.001617859,0.0001424273,0.0001143723,0.0001169353,0.0000226664,0.00003376648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1191195,"threshold_uncertainty_score":0.4734423,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02735005765257389,"score_gpt":0.3019136315612159,"score_spread":0.2745635739086419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}