{"id":"W4226375045","doi":"10.1039/d1md00070e","title":"Identification of ligand linkage vectors for the development of p300/CBP degraders","year":2022,"lang":"en","type":"article","venue":"RSC Medicinal Chemistry","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Children's Hospital Foundation","keywords":"Linker; Moiety; Ligand (biochemistry); Chemistry; Combinatorial chemistry; Small molecule; Linkage (software); Conjugate; Stereochemistry; Computational biology; Target protein; DNA ligase; Ubiquitin ligase; Biochemistry; Biology; Computer science; DNA; Ubiquitin; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004245815,0.0000809156,0.0001025856,0.00001573747,0.0001318679,0.00000311261,0.0002272836,0.00005131817,0.00004135093],"category_scores_gemma":[0.0001646108,0.00006583938,0.00006585039,0.00008744784,0.00008869617,0.000001640151,0.00007201544,0.00008183141,3.062749e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002083263,"about_ca_system_score_gemma":0.000175574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002582023,"about_ca_topic_score_gemma":0.000001117061,"domain_scores_codex":[0.9991362,0.0000156773,0.0003529968,0.0001631252,0.0002287302,0.0001032865],"domain_scores_gemma":[0.9994072,0.00002911414,0.0002295533,0.0002260544,0.00007301595,0.00003508525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005189631,0.00003842944,0.0001967798,0.0001157554,0.00004069085,1.229376e-7,0.0001937419,0.00002143643,0.9959773,0.000008592475,0.001286083,0.002069141],"study_design_scores_gemma":[0.0003497011,0.00005347854,0.0003835117,0.00001209485,0.00002194927,0.00000383313,0.0009422956,0.00006226379,0.980903,0.00001486524,0.01718478,0.00006817672],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993767,0.001198507,0.004076961,0.0003044672,0.0001503892,0.0002266458,0.0000273399,0.000005330372,0.0002433662],"genre_scores_gemma":[0.9984184,0.00002266004,0.0002698773,0.00004382987,0.0001192264,0.0001009322,0.0001541461,0.000009678037,0.0008612298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01589869,"threshold_uncertainty_score":0.2684852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01410471173838494,"score_gpt":0.2574947626027377,"score_spread":0.2433900508643528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}