{"id":"W4229038753","doi":"10.1080/00275514.2022.2045116","title":"Whole genome sequencing and phylogenomic analysis show support for the splitting of genus <i>Pythium</i>","year":2022,"lang":"en","type":"article","venue":"Mycologia","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Brain Research Centre; Agriculture and Agri-Food Canada; Ministry of Agriculture, Forestry and Fisheries; Government of Jiangsu Province","keywords":"Biology; Genus; Genome; Pythium; Evolutionary biology; Whole genome sequencing; DNA sequencing; Phylogenomics; Phylogenetics; Computational biology; Botany; Genetics; Clade; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006094025,0.00008078881,0.0001900629,0.00001551643,0.0005367959,0.00002043143,0.0002315348,0.00003394222,0.0001931021],"category_scores_gemma":[0.00002533833,0.00002818835,0.0001556013,0.0003836599,0.00005481119,0.00001920048,0.0001393714,0.0000834329,0.000001106653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003734319,"about_ca_system_score_gemma":0.00001245772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005771956,"about_ca_topic_score_gemma":0.0001518309,"domain_scores_codex":[0.9992343,0.0000554066,0.0001769007,0.000217357,0.0001084455,0.0002075553],"domain_scores_gemma":[0.9993946,0.0003609552,0.0001303036,0.00005684041,0.00002705201,0.00003028255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002229109,0.00001201024,0.006625423,0.000005493247,0.00009583701,0.000005367,0.00004913273,0.0005347901,0.9898474,0.00005969156,0.00009843872,0.002644094],"study_design_scores_gemma":[0.0001978086,0.0005750352,0.8863545,0.000002254084,0.0005618439,0.00003475644,0.0027207,0.002492727,0.002456883,0.0001668872,0.104147,0.0002896147],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971543,0.0008480076,0.00002297732,0.0002874596,0.00005266308,0.000223727,0.001191534,0.00001543367,0.0002039064],"genre_scores_gemma":[0.9988295,0.0000436228,0.0001541748,0.0002663885,0.00006043251,0.00005459803,0.0001221813,6.800411e-7,0.0004684124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9873906,"threshold_uncertainty_score":0.4128654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01999988669648507,"score_gpt":0.2049109306349776,"score_spread":0.1849110439384925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}