{"id":"W4229059847","doi":"10.1101/2022.05.04.490709","title":"Antigenic characterization and pandemic risk assessment of North American H1 influenza A viruses circulating in swine","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; Centers for Disease Control and Prevention; University of Saskatchewan; Icahn School of Medicine at Mount Sinai; U.S. Department of Agriculture","keywords":"Virology; Biology; Pandemic; Virus; H5N1 genetic structure; Antigenic drift; Hemagglutination assay; Antigen; Lineage (genetic); Influenza A virus; Population; Titer; Strain (injury); Genetics; Gene; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Disease; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003144749,0.0001977399,0.0001046411,0.0004153741,0.0001909976,0.0001719972,0.0001288118,0.0002775249,0.0004472368],"category_scores_gemma":[0.0003004453,0.00008160176,0.0001914472,0.0002909942,0.0001383592,0.0001424044,0.0001243958,0.0001596662,0.00008000634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001728957,"about_ca_system_score_gemma":0.0001115139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002693246,"about_ca_topic_score_gemma":0.002872656,"domain_scores_codex":[0.99986,0.0000412565,0.00001244283,0.00003444277,0.00003276518,0.00001911752],"domain_scores_gemma":[0.9997488,0.00006669587,0.00007505644,0.00001764314,0.00006077815,0.00003101888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004033392,0.0001691771,0.7373857,0.00005395044,0.00008149102,0.0002155504,0.0003321681,0.0006757025,0.2520144,0.00008636495,0.0001501194,0.008431992],"study_design_scores_gemma":[0.000006234059,0.0005701025,0.9862692,0.000005510433,0.00002363583,0.000670022,0.0003247735,0.001348423,0.0102129,0.00004346233,0.0005205963,0.000005138924],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995616,0.0000561652,0.000115427,0.000005835148,0.000001595673,0.000003819601,0.0000378657,0.000001259584,0.0002165224],"genre_scores_gemma":[0.9992957,0.00004570355,0.0003438368,0.00001471277,0.000002975863,0.000004464318,0.0001869046,6.919706e-7,0.0001051219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002693246,"threshold_uncertainty_score":0.00535512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05078913257110233,"score_gpt":0.3405706509842583,"score_spread":0.289781518413156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}