{"id":"W4229333362","doi":"10.1186/s40793-022-00416-2","title":"A putatively new family of alphaproteobacterial chloromethane degraders from a deciduous forest soil revealed by stable isotope probing and metagenomics","year":2022,"lang":"en","type":"article","venue":"Environmental Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agence Nationale de la Recherche; Deutsche Forschungsgemeinschaft","keywords":"Stable-isotope probing; Metagenomics; Soil water; Deciduous; Methylotroph; Temperate deciduous forest; Plant litter; Actinobacteria; Soil microbiology; Environmental chemistry; Ecology; Biology; Environmental science; Ecosystem; Microorganism; Chemistry","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001606179,0.0004601052,0.0002906188,0.001038316,0.0003796112,0.0006149901,0.0002421416,0.0003402929,0.0002408336],"category_scores_gemma":[0.000223916,0.0001751251,0.0002707441,0.0007753829,0.0002212993,0.0003044771,0.0002789545,0.0002154474,0.0001331742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000188244,"about_ca_system_score_gemma":0.0002597921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001867056,"about_ca_topic_score_gemma":0.002151429,"domain_scores_codex":[0.9997943,0.00001290103,0.00001321518,0.00008628122,0.00004124037,0.00005200688],"domain_scores_gemma":[0.9997661,0.00003863829,0.00005930561,0.00002414473,0.00006153279,0.00005035549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002214588,0.00005363991,0.03369252,0.00006579229,0.0000185167,0.0001809927,0.0002280317,0.00008459579,0.9573664,0.00005392164,0.0000411115,0.007993079],"study_design_scores_gemma":[0.00002247335,0.0004747749,0.8691666,0.00003805361,0.0001365678,0.002051193,0.001039156,0.00298717,0.1195372,0.0002843808,0.004231957,0.00003047548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970453,0.0005682653,0.001169229,0.00003373168,0.000007197913,0.00002396432,0.0008177625,0.00001695045,0.0003175427],"genre_scores_gemma":[0.992189,0.0005629458,0.003989972,0.00007233819,0.00001982503,0.00004870977,0.0022635,0.0000110896,0.000842461],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001867056,"threshold_uncertainty_score":0.003712356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008806337673720388,"score_gpt":0.183511310249458,"score_spread":0.1747049725757376,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}