{"id":"W4229444144","doi":"10.1111/jbg.12682","title":"Genomic integration to identify molecular biomarkers associated with indicator traits of gastrointestinal nematode resistance in sheep","year":2022,"lang":"en","type":"article","venue":"Journal of Animal Breeding and Genetics","topic":"Helminth infection and control","field":"Veterinary","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Candidate gene; Genetics; Genome-wide association study; Quantitative trait locus; Haemonchus contortus; Single-nucleotide polymorphism; Gene; Population; Haplotype; Immunology; Allele; Genotype; Helminths","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005549109,0.00009191913,0.000207856,0.0002782453,0.00006518415,0.00002688433,0.0001077745,0.00002378554,0.0000372079],"category_scores_gemma":[0.000120425,0.00008619465,0.00005111275,0.0002351125,0.00003118081,0.00004355132,0.00004092414,0.0002248903,5.785111e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001017781,"about_ca_system_score_gemma":0.00007024139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007134424,"about_ca_topic_score_gemma":0.00002860954,"domain_scores_codex":[0.9989583,0.000100203,0.0004299154,0.0001100723,0.0002597745,0.0001417651],"domain_scores_gemma":[0.9993545,0.00004906857,0.0003612638,0.00004452447,0.00009973194,0.00009094105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002344207,0.00009890352,0.04819852,0.00001710446,0.00006518214,0.0002262971,0.0007152495,0.0001359701,0.9470826,0.00007662288,0.000182148,0.0008572107],"study_design_scores_gemma":[0.001442745,0.007879453,0.9845089,0.0002601974,0.00005789693,0.00108065,0.001489572,0.0007144397,0.002250597,0.00007253073,0.0001044122,0.0001386287],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978304,0.0002374365,0.001364498,0.0002689964,0.00003991316,0.0000896291,0.00001004028,0.000005519919,0.0001535836],"genre_scores_gemma":[0.997988,0.000005600465,0.001871937,0.0000845046,0.00002526545,0.000003439622,9.299516e-7,0.00001253881,0.000007816272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.944832,"threshold_uncertainty_score":0.3514915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02863032389593406,"score_gpt":0.2996822089231693,"score_spread":0.2710518850272353,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}