{"id":"W4229802858","doi":"10.1002/9780470015902.a0005017.pub2","title":"Protein Coding","year":2013,"lang":"en","type":"other","venue":"Encyclopedia of Life Sciences","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Genetic code; Gene; Synonymous substitution; Codon usage bias; ENCODE; Genetics; Biology; Amino acid; Coding region; Silent mutation; Computational biology; Mutation; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008282618,0.001142539,0.0007322434,0.002682433,0.001289762,0.002802923,0.001253013,0.0009584388,0.3165122],"category_scores_gemma":[0.003002204,0.0002313829,0.000522812,0.004925415,0.0006037183,0.00117135,0.001423546,0.001144966,0.3169031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00150934,"about_ca_system_score_gemma":0.002517679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002795395,"about_ca_topic_score_gemma":0.001979208,"domain_scores_codex":[0.9991482,0.0001099661,0.00008643179,0.0001938542,0.0003505669,0.0001108747],"domain_scores_gemma":[0.9986618,0.0002103688,0.0001246317,0.0002916142,0.0005438403,0.0001677401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000198074,0.00006047584,0.0008727682,0.001232003,0.00002211552,0.0004571668,0.0001504491,0.0003872548,0.005894181,0.04664519,0.7022458,0.2418345],"study_design_scores_gemma":[0.0000065642,0.00000943917,0.0004156535,0.00009756003,0.000004334544,0.000137933,0.00002801675,0.00008472146,0.0006976435,0.002278844,0.9962325,0.000006856396],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.005385616,0.009115792,0.02907554,0.004687492,0.004018215,0.0006807981,0.2861518,0.005624386,0.6552604],"genre_scores_gemma":[0.02170921,0.009651103,0.02506507,0.002414285,0.0007085064,0.0006786195,0.3613091,0.00183446,0.5766298],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.3165122,"threshold_uncertainty_score":0.9749123,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01377658726853987,"score_gpt":0.247119370919729,"score_spread":0.2333427836511891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}