{"id":"W4230833283","doi":"10.17504/protocols.io.bjkvkkw6","title":"nCoV-2019 McGill Nanopore LibPrep Protocol, 5 ng NB v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Nanopore; Protocol (science); Nanopore sequencing; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Pandemic; Computer science; Biology; Nanotechnology; DNA sequencing; Medicine; Genetics; Materials science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002042858,0.0035878,0.004158563,0.002788844,0.004264953,0.003009376,0.005247613,0.002512122,0.06668802],"category_scores_gemma":[0.004533802,0.003310202,0.002160108,0.002194043,0.001750828,0.001469587,0.00262231,0.005832314,0.08903299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001280933,"about_ca_system_score_gemma":0.005300047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01014671,"about_ca_topic_score_gemma":0.03916368,"domain_scores_codex":[0.99675,0.0003994196,0.0002519247,0.001059693,0.0008826551,0.0006564445],"domain_scores_gemma":[0.9986333,0.0003091039,0.00007474439,0.0004839019,0.0003099733,0.0001889091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008055572,0.0003138201,0.001714234,0.003370064,0.0002080066,0.0007187594,0.0007998591,0.0008487078,0.7596636,0.007235202,0.1810662,0.04325585],"study_design_scores_gemma":[0.0001881319,0.000273361,0.004273211,0.000355096,0.0002356389,0.0006470754,0.0001491624,0.003973529,0.3196144,0.004911316,0.6651276,0.0002515684],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.0387584,0.005837279,0.466535,0.001763465,0.00243032,0.01178565,0.3244514,0.0499198,0.09851879],"genre_scores_gemma":[0.03570642,0.001616044,0.3343203,0.002622929,0.0003542743,0.01335245,0.4767166,0.02060906,0.1147019],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.06668802,"threshold_uncertainty_score":0.2230936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02931544112840499,"score_gpt":0.2793101030395349,"score_spread":0.2499946619111299,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}