{"id":"W4231147081","doi":"10.1007/978-1-4939-9055-9_13","title":"Mass Spectrometric Determination of Protein Ubiquitination","year":2019,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Ubiquitin; Chemistry; Peptide; Lysine; Side chain; Ion; Mass spectrometry; Tandem mass spectrometry; Biochemistry; Chromatography; Amino acid; Organic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008379255,0.001055405,0.0007682776,0.001564262,0.001114543,0.000701535,0.0009697985,0.001054208,0.002739226],"category_scores_gemma":[0.0009831932,0.0003913176,0.0004566727,0.00101358,0.0004651578,0.0007685368,0.0004422328,0.001645818,0.001637002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000939395,"about_ca_system_score_gemma":0.0007021928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009085511,"about_ca_topic_score_gemma":0.002257336,"domain_scores_codex":[0.999293,0.0001008709,0.00004338005,0.0002154924,0.0002669962,0.00008034767],"domain_scores_gemma":[0.9992769,0.0001282113,0.0001090441,0.00009014971,0.0003025773,0.00009319242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002928221,0.0001462119,0.001030986,0.0001254045,0.00006523129,0.00007610676,0.00005435257,0.0001375062,0.9865832,0.001135027,0.0006187031,0.009734342],"study_design_scores_gemma":[0.00001804338,0.0001408015,0.004451375,0.00001736174,0.00003307321,0.0004606531,0.00003567388,0.002251962,0.9887239,0.0004823429,0.00336517,0.00001967264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.607017,0.01732685,0.3380654,0.001459198,0.001228158,0.0006833012,0.005506628,0.002414961,0.02629856],"genre_scores_gemma":[0.7934141,0.007975497,0.1610813,0.001840487,0.0001634972,0.0008243527,0.005848673,0.0002014509,0.02865061],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002739226,"threshold_uncertainty_score":0.009163618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01352500468999297,"score_gpt":0.3844297971461843,"score_spread":0.3709047924561913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}