{"id":"W4231800260","doi":"10.1186/s12885-018-4482-7","title":"DNA methylation signatures of breast cancer in peripheral T-cells","year":2018,"lang":"en","type":"article","venue":"BMC Cancer","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Polytechnique Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"DNA methylation; Breast cancer; Cancer; Surgical oncology; Methylation; Peripheral blood mononuclear cell; Immune system; Biology; Cancer research; Immunology; DNA; Medicine; Molecular biology; Gene; Oncology; Genetics; Gene expression; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001149159,0.00009058185,0.0001044088,0.00003969956,0.00002418507,0.000008207201,0.00008048461,0.0001220395,0.0002587177],"category_scores_gemma":[0.00001058782,0.00008552302,0.00004685946,0.0001072794,0.00006781753,0.000003630334,0.00003165912,0.00004413721,0.000001391233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002862881,"about_ca_system_score_gemma":0.0001229202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006062168,"about_ca_topic_score_gemma":0.005169379,"domain_scores_codex":[0.9993446,0.000044938,0.000167341,0.0002068098,0.00009906519,0.0001372282],"domain_scores_gemma":[0.999597,0.000006850462,0.00008512015,0.0001543719,0.0001248361,0.00003179404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009418834,0.00002166128,0.02378689,0.00001602277,0.00001226911,1.062589e-7,0.00007351399,0.001714025,0.9672881,0.00002136152,0.0002000236,0.006771871],"study_design_scores_gemma":[0.0003496789,0.00006318525,0.1417083,0.00002070931,0.000008717425,1.543451e-7,0.00001583781,0.0003973425,0.8531249,0.00007859138,0.004125637,0.0001069885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919676,0.005527305,0.001158042,0.00005119493,0.000324479,0.0001173778,0.00008403674,0.000003843294,0.0007660836],"genre_scores_gemma":[0.9977298,0.0007382683,0.0003994263,0.00005630098,0.0005394756,0.00002941137,0.00001486349,0.00001453966,0.0004779409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1179214,"threshold_uncertainty_score":0.3487527,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179121813968934,"score_gpt":0.2915866496384572,"score_spread":0.2797954314987678,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}