{"id":"W4232221203","doi":"10.1007/978-3-319-28755-3_7","title":"Mutation","year":2016,"lang":"en","type":"book-chapter","venue":"Evolutionary Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Genetics; Gene; Biology; Synonymous substitution; Mutation; Genome; Silent mutation; Amino acid; Phenotype; Mutation rate; Codon usage bias; Missense mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006695319,0.0002550886,0.0001733031,0.00006462644,0.000109952,0.00001095579,0.0001609766,0.0003086118,0.00009812753],"category_scores_gemma":[0.00002039997,0.0002155605,0.0001443936,0.000009744749,0.0001227334,0.000001258503,0.0001634871,0.00007728757,0.0003982779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003753742,"about_ca_system_score_gemma":0.000120326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":4.508294e-7,"about_ca_topic_score_gemma":0.000002263445,"domain_scores_codex":[0.9991193,0.000004992233,0.0003476496,0.0001813485,0.0001639638,0.0001827657],"domain_scores_gemma":[0.9992386,0.0000119796,0.0002100619,0.0003455115,0.0001313389,0.00006252406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002608095,0.00007946551,0.0003156472,0.0005044735,0.001986517,0.00002812444,0.0004421852,0.0002356756,0.01307854,0.3608401,0.5073393,0.1148892],"study_design_scores_gemma":[0.0002854052,0.0001921858,0.0002900594,0.00005458716,0.00004245586,0.00005858105,0.00001412337,0.00009866627,0.0002099243,0.01181748,0.9865246,0.0004118703],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.0003648489,0.003731688,0.001922347,0.0001745187,0.0004964818,0.000271643,0.0004451521,0.00001164239,0.9925817],"genre_scores_gemma":[0.01111418,0.003347618,0.009907255,0.0004324187,0.001213406,0.00002093451,0.0007442377,0.00008192432,0.973138],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.4791853,"threshold_uncertainty_score":0.8790301,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009455807938175806,"score_gpt":0.2069407350438115,"score_spread":0.1974849271056357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}