{"id":"W4232221203","doi":"10.1007/978-3-319-28755-3_7","title":"Mutation","year":2016,"lang":"en","type":"book-chapter","venue":"Evolutionary Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Genetics; Gene; Biology; Synonymous substitution; Mutation; Genome; Silent mutation; Amino acid; Phenotype; Mutation rate; Codon usage bias; Missense mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003488903,0.0009732911,0.0006226377,0.0009726121,0.0009415451,0.001928183,0.001391027,0.001372877,0.07226945],"category_scores_gemma":[0.0007695151,0.0002613343,0.000641054,0.0008268727,0.001161506,0.001757716,0.001515574,0.001892269,0.03924229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009025129,"about_ca_system_score_gemma":0.0006013614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006841208,"about_ca_topic_score_gemma":0.0009552048,"domain_scores_codex":[0.999645,0.00003802098,0.00002008206,0.0001117143,0.0001523185,0.00003285801],"domain_scores_gemma":[0.9997707,0.00006085146,0.00002111038,0.00004273305,0.00006903355,0.00003561954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001111661,0.00007629324,0.0003765723,0.0008077832,0.00002384675,0.001151074,0.0004110113,0.0004855132,0.01240615,0.16994,0.3702045,0.4440061],"study_design_scores_gemma":[0.000006435158,0.00002363493,0.000193971,0.0001220016,0.000006287521,0.001779014,0.00003641616,0.0001145364,0.001355027,0.01278737,0.9835649,0.00001033684],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.008166595,0.08125412,0.04551407,0.007686468,0.01556347,0.0003258356,0.003134823,0.002476828,0.8358779],"genre_scores_gemma":[0.02209976,0.02456363,0.01589167,0.004278553,0.001131446,0.0001773742,0.002106807,0.0006497842,0.9291009],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.07226945,"threshold_uncertainty_score":0,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009455807938175806,"score_gpt":0.2069407350438115,"score_spread":0.1974849271056357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}