{"id":"W4232849376","doi":"10.1385/1-59259-038-1:729","title":"DNase I Footprinting","year":2003,"lang":"en","type":"book-chapter","venue":"Humana Press eBooks","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hôtel-Dieu de Québec","funders":"","keywords":"Footprinting; DNA footprinting; Deoxyribonuclease I; Hypersensitive site; DNA; Molecular biology; Biology; DNase I hypersensitive site; HMG-box; DNA binding site; Transcription factor; DNA-binding protein; Promoter; Biochemistry; Gene; Gene expression; Base sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001311517,0.0003268216,0.0002819635,0.00004323716,0.0001029395,0.00003493384,0.0003024151,0.0006740494,0.00004425248],"category_scores_gemma":[0.00004641437,0.0003121088,0.0001900208,0.000001782539,0.0002721861,4.263906e-7,0.0002230442,0.0002916519,0.00001297765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001099869,"about_ca_system_score_gemma":0.00003602483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001329012,"about_ca_topic_score_gemma":0.00001522272,"domain_scores_codex":[0.9987119,0.00002261096,0.0002731453,0.0005297501,0.000174003,0.0002886071],"domain_scores_gemma":[0.9990705,0.00001298531,0.0001626263,0.0005938051,0.00005461003,0.0001054455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007975094,0.00003543953,0.000004159263,0.0002818451,0.0006555466,0.0001289876,0.0001345755,0.000002426363,0.00571902,0.1512194,0.104274,0.7374649],"study_design_scores_gemma":[0.0002355321,0.0001200063,0.000003262476,0.0000741896,0.00005198052,0.00001531562,0.000004575763,9.523126e-7,0.00881276,0.001624322,0.9886926,0.0003644466],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.0002955644,0.010869,0.0002585518,0.00001571344,0.000298688,0.0001629005,0.00001058321,0.00005635714,0.9880326],"genre_scores_gemma":[0.002361908,0.0005675817,0.000880629,0.000490225,0.0005592846,0.0000226442,0.00006093495,0.00008790909,0.9949689],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.8844187,"threshold_uncertainty_score":0.9999331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06355862030086441,"score_gpt":0.2731416649700737,"score_spread":0.2095830446692093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}