{"id":"W4233698560","doi":"10.1093/nar/gkx1132","title":"The Reactome Pathway Knowledgebase","year":2017,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3172,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute","keywords":"Biology; Computational biology; Computer science; Information retrieval; Bioinformatics; Database","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002570397,0.003623041,0.002163599,0.009685293,0.001154115,0.00434904,0.004324466,0.002033196,0.06134658],"category_scores_gemma":[0.006647067,0.00158917,0.003053456,0.007456192,0.0004850007,0.00271903,0.003810529,0.002605454,0.04835235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001492563,"about_ca_system_score_gemma":0.004561424,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004752179,"about_ca_topic_score_gemma":0.004488442,"domain_scores_codex":[0.9982302,0.0002934607,0.0002765702,0.0005008989,0.0005675149,0.0001314291],"domain_scores_gemma":[0.9977062,0.0007310676,0.0002691541,0.0005823683,0.000481669,0.000229555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001288981,0.0002276908,0.003933544,0.01548516,0.001161295,0.001404872,0.0003352406,0.02992563,0.01343101,0.05414872,0.7202331,0.1584247],"study_design_scores_gemma":[0.0001883273,0.00003837415,0.001348972,0.0008457649,0.0003435232,0.0007476059,0.00007164956,0.01101049,0.008177992,0.03564876,0.9414531,0.0001254147],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.002460812,0.005559025,0.09230268,0.0008672907,0.0003945452,0.0005085427,0.8143423,0.06163837,0.02192629],"genre_scores_gemma":[0.009573105,0.005277189,0.06093885,0.0004992092,0.00007721163,0.001020789,0.9127163,0.005514195,0.004382992],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.06134658,"threshold_uncertainty_score":0.2052248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04006357190179961,"score_gpt":0.3409879473299789,"score_spread":0.3009243754281793,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}