{"id":"W4234647679","doi":"10.1093/nar/gkg508","title":"The PredictProtein server","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":247,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium","funders":"Sandia National Laboratories; U.S. National Library of Medicine; National Institute of General Medical Sciences; National Institutes of Health; European Bioinformatics Institute","keywords":"Biology; Threading (protein sequence); The Internet; Web server; Sequence (biology); Coiled coil; Computational biology; Peptide sequence; Protein structure; Bioinformatics; Computer science; Genetics; World Wide Web; Biophysics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002061827,0.003153467,0.003234965,0.002762831,0.001859944,0.00409021,0.004894027,0.001643377,0.06637975],"category_scores_gemma":[0.002714486,0.002148214,0.001829566,0.002815673,0.0004868279,0.002162168,0.002830174,0.00330463,0.1300934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001694645,"about_ca_system_score_gemma":0.003152118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004372393,"about_ca_topic_score_gemma":0.004820911,"domain_scores_codex":[0.9987387,0.0001792318,0.00009803182,0.0003814399,0.0004266865,0.0001759622],"domain_scores_gemma":[0.9989857,0.000199927,0.0000998275,0.0002244496,0.0002384996,0.0002516076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005976939,0.0001468009,0.001633762,0.001084222,0.0001922185,0.0002474715,0.00007742752,0.001144705,0.008757642,0.005007521,0.9400612,0.04104931],"study_design_scores_gemma":[0.0005243058,0.0001146891,0.003749345,0.0002601696,0.0002340795,0.001263246,0.00008674226,0.03003395,0.01744452,0.01482223,0.9313192,0.000147573],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.01442448,0.008493914,0.1171325,0.001876106,0.00135506,0.001001795,0.4133091,0.3875572,0.05484984],"genre_scores_gemma":[0.03016824,0.00272251,0.08689223,0.0008512753,0.0002624062,0.001089375,0.8228791,0.02509387,0.03004095],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.06637975,"threshold_uncertainty_score":0.2220624,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01953608968744188,"score_gpt":0.3100326693976991,"score_spread":0.2904965797102573,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}