{"id":"W4234647679","doi":"10.1093/nar/gkg508","title":"The PredictProtein server","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":247,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium","funders":"Sandia National Laboratories; U.S. National Library of Medicine; National Institute of General Medical Sciences; National Institutes of Health; European Bioinformatics Institute","keywords":"Biology; Threading (protein sequence); The Internet; Web server; Sequence (biology); Coiled coil; Computational biology; Peptide sequence; Protein structure; Bioinformatics; Computer science; Genetics; World Wide Web; Biophysics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001179872,0.00009365991,0.00006560845,0.00002920436,0.0004636212,0.00007474396,0.0003987486,0.0001570768,0.00005315371],"category_scores_gemma":[0.0005617067,0.00006323861,0.000054928,0.0001800646,0.0002742118,0.000002955223,0.0001619289,0.0002934168,0.00006546542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001977308,"about_ca_system_score_gemma":0.0001361594,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001409555,"about_ca_topic_score_gemma":0.0000392382,"domain_scores_codex":[0.9984631,0.0002811017,0.0001227918,0.00026887,0.0004010292,0.0004630996],"domain_scores_gemma":[0.9990368,0.00002986103,0.00002034169,0.0006344587,0.0001825592,0.00009596485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003626954,0.0001007242,0.01214814,0.00004756456,0.0001659374,0.00002403063,0.0001439771,0.00003662006,0.8227182,0.08014102,0.04684149,0.0372696],"study_design_scores_gemma":[0.0004092251,0.0003153259,0.002807568,0.00000599485,0.000002999875,0.00002258705,0.0001315494,0.00006962424,0.1240893,0.007961093,0.8640378,0.000146965],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9511375,0.001752963,0.000672518,0.0005624901,0.0001534273,0.0005052214,0.000007664858,0.0000195682,0.04518865],"genre_scores_gemma":[0.9919699,0.0002357256,0.0005820601,0.0001083179,0.0001578955,0.00005794216,0.00001163271,0.00002353115,0.006852946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8171962,"threshold_uncertainty_score":0.3565846,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01953608968744188,"score_gpt":0.3100326693976991,"score_spread":0.2904965797102573,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}