{"id":"W4236102739","doi":"10.21203/rs.3.rs-22911/v3","title":"Moderate rate of transmitted resistance mutations to antiretrovirals and genetic diversity in newly HIV-1 patients diagnosed in Benin.","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Genetic diversity; Transmission (telecommunications); Drug resistance; Human immunodeficiency virus (HIV); Mutation; Phylogenetic tree; Virology; Transmission rate; Mutation rate; HIV drug resistance; Drug; Resistance (ecology); Intravenous drug; Biology; Medicine; Genetics; Antiretroviral therapy; Environmental health; Gene; Viral load; Pharmacology; Population; Viral disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000173446,0.0001720471,0.0001490467,0.0006833591,0.0005335825,0.0004079186,0.0001458612,0.0003433781,0.002556178],"category_scores_gemma":[0.0007401459,0.0001774021,0.0000717635,0.0003029139,0.0002378778,0.0002888261,0.0002368032,0.0002593842,0.0002321824],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003413263,"about_ca_system_score_gemma":0.0001713649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005261404,"about_ca_topic_score_gemma":0.005858092,"domain_scores_codex":[0.9998203,0.00005226105,0.00001103453,0.00004141656,0.00001879305,0.0000561332],"domain_scores_gemma":[0.9996958,0.0000838638,0.00009886482,0.00001017368,0.00002961826,0.0000815804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001326551,0.0000370027,0.9965952,0.000009844447,0.000006195034,0.0006075893,0.0003690659,0.0000267461,0.0006787159,0.0000256,0.00007537861,0.001436002],"study_design_scores_gemma":[0.00001101229,0.0001391244,0.996286,0.000009311035,0.000005329472,0.001864069,0.001007608,0.0001759786,0.0001843435,0.00002813371,0.0002843329,0.00000464941],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996213,0.00007254216,0.0000138039,0.00002454028,0.000002127595,0.000002989359,0.00007187849,9.632828e-7,0.0001898584],"genre_scores_gemma":[0.9997434,0.00003097479,0.00001715403,0.00001262797,0.000004634149,0.000002203311,0.00006702453,5.367405e-7,0.0001214995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005261404,"threshold_uncertainty_score":0.01046151,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05321874925608462,"score_gpt":0.3429802965096296,"score_spread":0.289761547253545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}