{"id":"W4236264355","doi":"10.12688/f1000research.4389","title":"Thiolation-enhanced substrate recognition by D-alanyl carrier protein ligase DltA from Bacillus cereus","year":2014,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Health Research Foundation","keywords":"Bacillus cereus; Open peer review; Substrate (aquarium); Plant biology; Biology; Microbiology; Chemistry; Computational biology; Bacteria; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001407291,0.0003506525,0.0004219993,0.0001172679,0.0001158419,0.000388211,0.0002304531,0.0003586228,0.000810585],"category_scores_gemma":[0.0002510735,0.0001583844,0.0002901744,0.0002640399,0.0001576984,0.0002281303,0.0003602789,0.0005166368,0.0007324712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004675771,"about_ca_system_score_gemma":0.0002061237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001645554,"about_ca_topic_score_gemma":0.001508484,"domain_scores_codex":[0.9998184,0.00002625852,0.00001881437,0.00004091726,0.00005765797,0.00003799474],"domain_scores_gemma":[0.9999164,0.00001211993,0.00002164565,0.000009279583,0.00001604,0.0000243809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006066394,0.0000110922,0.0001510262,0.00004765856,0.000002654634,0.00002856399,0.00001080058,0.00003815416,0.9985754,0.00003520478,0.00003168202,0.001006958],"study_design_scores_gemma":[0.00001452239,0.00009019021,0.002014692,0.000005174909,0.00000755618,0.0001888986,0.0000263089,0.0009497356,0.9946845,0.00002510633,0.001986998,0.000006300108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993404,0.001434797,0.003075167,0.0002353793,0.00004113986,0.00002127808,0.0003713316,0.0001226416,0.001294421],"genre_scores_gemma":[0.9880874,0.0007866154,0.005702838,0.00007839578,0.00001020169,0.00002766347,0.00148632,0.00005428034,0.003766279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001645554,"threshold_uncertainty_score":0.003392577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02121613791171979,"score_gpt":0.2785910311730767,"score_spread":0.2573748932613569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}