{"id":"W4236918082","doi":"10.1177/117693430600200002","title":"MBEToolbox 2.0: An enhanced version of a MATLAB toolbox for Molecular Biology and Evolution","year":2006,"lang":"en","type":"article","venue":"Evolutionary Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Toolbox; Computer science; MATLAB; Software; Bayesian probability; Phylogenetic tree; Nonsynonymous substitution; Substitution (logic); Maximum likelihood; Computational biology; Data mining; Bioinformatics; Biology; Artificial intelligence; Genome; Programming language; Statistics; Genetics; Mathematics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001169787,0.001333277,0.00130396,0.001610262,0.0004164286,0.001303743,0.003047277,0.001092888,0.1067224],"category_scores_gemma":[0.005473408,0.0009335277,0.0008202055,0.001134143,0.0003669644,0.001917129,0.001763012,0.001786605,0.07130951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004184718,"about_ca_system_score_gemma":0.0009631512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001234848,"about_ca_topic_score_gemma":0.0011214,"domain_scores_codex":[0.9994509,0.0001057686,0.00005756146,0.0001181506,0.0002077014,0.00005997513],"domain_scores_gemma":[0.9982764,0.0008803315,0.0002101252,0.0001648449,0.0003645429,0.0001037776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005252878,0.000128285,0.001723437,0.002030815,0.0001770227,0.0007042007,0.0003750062,0.02091842,0.03644904,0.02119296,0.4255887,0.4901868],"study_design_scores_gemma":[0.0004563874,0.0001623432,0.004523593,0.0003977983,0.0001158214,0.00215479,0.0000633993,0.2410298,0.04311031,0.04289366,0.6648209,0.0002712907],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001961568,0.0003919929,0.8430633,0.0002414018,0.0001830359,0.0001254781,0.0082707,0.137447,0.008315504],"genre_scores_gemma":[0.0257175,0.00104884,0.8753554,0.0006192072,0.000186071,0.001723265,0.01800368,0.0510285,0.02631744],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.1067224,"threshold_uncertainty_score":0.3570219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004488704414150137,"score_gpt":0.2312291387431765,"score_spread":0.2267404343290264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}