{"id":"W4237415080","doi":"10.21203/rs.3.rs-136319/v1","title":"Human Cell-dependent, Directional, Time-dependent Changes in the Mono- and Oligonucleotide Compositions of SARS-CoV-2 Genomes","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Research Organization of Information and Systems; Institute of Genetics; Japan Agency for Medical Research and Development","keywords":"Biology; Genome; Clade; Population; Coronavirus; Adaptation (eye); Oligonucleotide; Host (biology); Host adaptation; Virus; Gene; Coronaviridae; Evolutionary biology; Virology; Genetics; Coronavirus disease 2019 (COVID-19); Phylogenetics; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001492718,0.0001362318,0.0001518177,0.0002346494,0.0001071139,0.0002542361,0.00007836253,0.000186203,0.001368187],"category_scores_gemma":[0.0003266521,0.0001235935,0.0001483324,0.0002470046,0.0001238403,0.0001312096,0.0001049349,0.0001817556,0.0002869531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001419768,"about_ca_system_score_gemma":0.0001405629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007936985,"about_ca_topic_score_gemma":0.001022146,"domain_scores_codex":[0.9998189,0.00003581265,0.00001116991,0.00005815373,0.00004992792,0.00002607735],"domain_scores_gemma":[0.9998292,0.00004378189,0.00004260387,0.00001772345,0.00004600799,0.00002073066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002235242,0.00002088236,0.005752381,0.00003912161,0.00001366577,0.00003842872,0.0000540448,0.0001950407,0.9899257,0.00005123485,0.00006211988,0.003623837],"study_design_scores_gemma":[0.00001339767,0.0007848587,0.159687,0.00001216131,0.00005818527,0.0005543002,0.0002945783,0.004199472,0.8293641,0.0001415086,0.00486831,0.00002204882],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953838,0.001140237,0.001648108,0.00002960029,0.0000190417,0.00002086059,0.0006594011,0.00002315512,0.001075804],"genre_scores_gemma":[0.9948673,0.000668222,0.002007677,0.00004674531,0.000009247407,0.00003564011,0.001180105,0.000009106418,0.001175936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001368187,"threshold_uncertainty_score":0.004577041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1036643084635284,"score_gpt":0.4216493120116142,"score_spread":0.3179850035480857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}