{"id":"W4237497555","doi":"10.3410/f.736464528.793566607","title":"Faculty Opinions recommendation of Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.","year":2019,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network","funders":"Deutsche Forschungsgemeinschaft; Moxie Foundation; National Institutes of Health; Consorzio Interuniversitario Biotecnologie; University of Texas Health Science Center at San Antonio; Ludwig Institute for Cancer Research","keywords":"Retrotransposon; Induced pluripotent stem cell; Biology; Computational biology; Evolutionary biology; Genetics; Embryonic stem cell; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002207083,0.001158441,0.001116382,0.003772645,0.001013524,0.002259711,0.002470187,0.001903508,0.06354623],"category_scores_gemma":[0.01130379,0.0004833888,0.001122347,0.005099196,0.0003968357,0.001132092,0.00191231,0.001464554,0.05163882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00122535,"about_ca_system_score_gemma":0.003032766,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01420997,"about_ca_topic_score_gemma":0.04452978,"domain_scores_codex":[0.9980419,0.000349182,0.0002547845,0.0006996685,0.0004138417,0.0002407358],"domain_scores_gemma":[0.9957194,0.001460418,0.00055457,0.0009260519,0.0009256466,0.0004139906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000257621,0.00004192145,0.0112678,0.002297725,0.0001669419,0.00009811782,0.0001288362,0.0006062625,0.001370702,0.001627567,0.9723616,0.009774937],"study_design_scores_gemma":[0.0001779299,0.00002335507,0.01809403,0.0005114253,0.0001257555,0.0001047699,0.0001589933,0.0005525282,0.001465871,0.002114339,0.9766265,0.00004458759],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0003070723,0.00005179503,0.0001657748,0.00006429616,0.00002308711,0.00001105429,0.9984747,0.0002202957,0.000681907],"genre_scores_gemma":[0.001264513,0.00004513377,0.0008819198,0.00004971789,0.000006293912,0.00007821782,0.9968376,0.000111063,0.0007254647],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.06354623,"threshold_uncertainty_score":0.2125834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04051154420909607,"score_gpt":0.3105253074954935,"score_spread":0.2700137632863974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}