{"id":"W4238375242","doi":"10.7287/peerj.806v0.1/reviews/2","title":"Peer Review #2 of \"Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance (v0.1)\"","year":2015,"lang":"en","type":"peer-review","venue":"","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Emory University","keywords":"Neisseria gonorrhoeae; Antibiotic resistance; Microbiology; Antibiotics; Biology; Population; Computational biology; Medicine; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.007444295,0.0008550133,0.001310808,0.006253512,0.003158435,0.005803,0.002382284,0.00188222,0.2821346],"category_scores_gemma":[0.07614768,0.0005799035,0.0008181647,0.00321496,0.001300857,0.003491073,0.003309695,0.001239199,0.1512705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001681998,"about_ca_system_score_gemma":0.009305519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005996395,"about_ca_topic_score_gemma":0.01289837,"domain_scores_codex":[0.9929031,0.0009999266,0.0005379764,0.000579096,0.004465013,0.0005149219],"domain_scores_gemma":[0.8907656,0.008423715,0.002889279,0.005041032,0.08452786,0.008352515],"domain_codex":null,"domain_gemma":"evaluation","domain_candidate":"evaluation","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004921031,0.00001971438,0.001467925,0.0008770499,0.000021012,0.0002412584,0.0001775593,0.00005209227,0.0007112039,0.0006778706,0.9395865,0.0561185],"study_design_scores_gemma":[0.00002211725,0.00002372395,0.004222231,0.0003788019,0.00002083334,0.000265381,0.000204998,0.0002763142,0.0006952057,0.0006194502,0.9932476,0.00002338739],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"other","genre_scores_codex":[0.02446638,0.01705376,0.01612322,0.1422651,0.3981901,0.004886032,0.04505553,0.01022605,0.3417338],"genre_scores_gemma":[0.09017722,0.01895095,0.01487643,0.009731271,0.06408749,0.001263257,0.04440844,0.007013478,0.7494915],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9925557,"threshold_uncertainty_score":0.9438341,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08230514822965626,"score_gpt":0.3628745593319034,"score_spread":0.2805694111022471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}