{"id":"W4239015447","doi":"10.7287/peerj.preprints.2638","title":"Local genes for local bacteria: evidence of allopatry in the genomes of transatlantic <i>Campylobacter </i>populations","year":2017,"lang":"en","type":"preprint","venue":"","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Canadian Food Inspection Agency; Health Canada","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council","keywords":"Biology; Campylobacter; Genome; Evolutionary biology; Genetics; Allopatric speciation; Campylobacter jejuni; Campylobacter coli; Clade; Gene; Phylogenetics; Population; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002167252,0.0001791564,0.0002590216,0.0006024038,0.0002850575,0.0004564027,0.0001692545,0.0002957081,0.001057209],"category_scores_gemma":[0.0007747001,0.0001326228,0.0002512246,0.0008570718,0.0003769418,0.0002183172,0.0003382689,0.0002804087,0.0002301374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002926563,"about_ca_system_score_gemma":0.0001776125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003543302,"about_ca_topic_score_gemma":0.00605252,"domain_scores_codex":[0.9997721,0.0000400914,0.00001698684,0.0001069913,0.00003012586,0.00003356675],"domain_scores_gemma":[0.9992523,0.0001875693,0.0003106835,0.00007698064,0.00007583321,0.00009666185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006805239,0.00005623872,0.6433693,0.0002561374,0.0001956613,0.0004475729,0.002038798,0.0007921191,0.3330418,0.0002512929,0.0001566807,0.01871395],"study_design_scores_gemma":[0.000006974227,0.00009275773,0.9952403,0.00001931843,0.00004552693,0.0004391118,0.0003873947,0.0004743087,0.00278131,0.00006992739,0.0004360171,0.0000071697],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991042,0.0003033938,0.0002417079,0.00001606969,7.872854e-7,0.000004052032,0.0001514306,0.000004389656,0.0001739019],"genre_scores_gemma":[0.9987999,0.0001062548,0.0005024913,0.00001973611,0.000001536289,0.000004960118,0.0004574552,0.00000431322,0.0001033229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003543302,"threshold_uncertainty_score":0.007045329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1249124687635337,"score_gpt":0.32024003403607,"score_spread":0.1953275652725364,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}