{"id":"W4242003150","doi":"10.1128/mra.00688-19","title":"Complete Genome Sequence of GD1696, a Low-Virulence Strain of Human-Associated ST398 Methicillin-Susceptible Staphylococcus aureus","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"Canadian Institutes of Health Research; Government of Canada; Alberta Health Services","keywords":"Virulence; Staphylococcus aureus; Whole genome sequencing; Microbiology; Biology; Strain (injury); Multilocus sequence typing; Genome; Virology; Gene; Genetics; Bacteria; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009950165,0.000503513,0.001447283,0.0003659481,0.0001391902,0.000014245,0.0007093354,0.0004962021,0.0006416565],"category_scores_gemma":[0.0001669361,0.0004806164,0.0003474364,0.0007047484,0.001100476,0.00008698221,0.0002691766,0.0006416932,0.0001499248],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003039902,"about_ca_system_score_gemma":0.0002968708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001725406,"about_ca_topic_score_gemma":0.00006235034,"domain_scores_codex":[0.9962071,0.0003270898,0.001332767,0.0008471302,0.0003604892,0.0009254009],"domain_scores_gemma":[0.9968411,0.0001974319,0.001087127,0.001031849,0.0006894807,0.0001529721],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004651636,0.0005134798,0.02841708,0.00047132,0.0004880916,0.00002820407,0.0006885585,0.0001306249,0.967871,0.000103975,0.0007489877,0.00007349173],"study_design_scores_gemma":[0.03368307,0.02068557,0.03417213,0.008085116,0.001631984,0.0000958465,0.006667177,0.0002610979,0.4185725,0.0006230004,0.4710199,0.004502616],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801509,0.0004781322,0.000119315,0.0001493897,0.0001500433,0.001443013,0.01544274,0.00006916097,0.001997295],"genre_scores_gemma":[0.9902667,0.00006275746,0.000564268,0.0007654908,0.00004773029,0.00002194055,0.005237329,0.00006340055,0.002970398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5492986,"threshold_uncertainty_score":0.9997646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03383576061380188,"score_gpt":0.2967462320669489,"score_spread":0.262910471453147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}