{"id":"W4242777923","doi":"10.17504/protocols.io.bui7nuhn","title":"SARS-CoV-2 NCBI submission protocol: SRA, BioSample, and BioProject v3","year":2021,"lang":"en","type":"preprint","venue":"","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Protocol (science); Biology; Coronavirus disease 2019 (COVID-19); Metadata; Computational biology; World Wide Web; Computer science; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01910344,0.002328439,0.002819281,0.005143982,0.005523264,0.00564935,0.005094585,0.004628121,0.2506298],"category_scores_gemma":[0.03831131,0.003354461,0.002109665,0.004329243,0.001740936,0.005197671,0.00630957,0.005359642,0.3481112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002195637,"about_ca_system_score_gemma":0.009402911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004474376,"about_ca_topic_score_gemma":0.006562518,"domain_scores_codex":[0.9795097,0.007154534,0.003810267,0.002421507,0.005396293,0.001707875],"domain_scores_gemma":[0.970834,0.005721333,0.002033611,0.008223017,0.01131898,0.001868932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009582244,0.0001683098,0.001034911,0.001910418,0.00004947517,0.0001878461,0.0003605725,0.000135164,0.02432088,0.003232161,0.9470266,0.02061552],"study_design_scores_gemma":[0.0002960164,0.0003169172,0.002339751,0.0008906542,0.00004576397,0.0003781524,0.000320831,0.0003226591,0.02280843,0.002695755,0.9694437,0.0001413253],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"protocol","genre_scores_codex":[0.007778031,0.003714859,0.1715788,0.009019031,0.009547637,0.03744858,0.5893143,0.06561219,0.1059865],"genre_scores_gemma":[0.01088084,0.002536483,0.1090463,0.006438691,0.001400871,0.03354234,0.7290422,0.0241548,0.08295741],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.2506298,"threshold_uncertainty_score":0.8384404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05426375299418242,"score_gpt":0.3599418889722303,"score_spread":0.3056781359780479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}