{"id":"W4243245296","doi":"10.1371/journal.pone.0128773","title":"Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Association of Friendship Centres; Jewish General Hospital; McGill University and Génome Québec Innovation Centre; Agriculture and Agri-Food Canada; Dalhousie University","funders":"Agriculture and Agri-Food Canada","keywords":"Salmonella enterica; Serotype; Biology; Pathogenicity island; Salmonella; Microbiology; Virulence; Plasmid; Salmonella enteritidis; Phylogenetic tree; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001559896,0.0002628716,0.0002045028,0.0007707021,0.0002512397,0.0003959945,0.0001561852,0.0002989261,0.0006687291],"category_scores_gemma":[0.000458809,0.0001290525,0.0003062206,0.0006650945,0.0001811049,0.000144052,0.0002628614,0.0002384924,0.0002061906],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002627962,"about_ca_system_score_gemma":0.0002417615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004296321,"about_ca_topic_score_gemma":0.006276269,"domain_scores_codex":[0.9998097,0.0000198647,0.00002805077,0.00007527981,0.00003075153,0.00003648865],"domain_scores_gemma":[0.9995778,0.0001005469,0.0001442409,0.00002361521,0.00008492258,0.00006889673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001308266,0.0001345681,0.2605045,0.0003449491,0.0001225381,0.0005886381,0.001509649,0.0003235237,0.7267721,0.00005453418,0.0001408732,0.008196003],"study_design_scores_gemma":[0.000008360085,0.0003506092,0.9879901,0.00002262881,0.00008144906,0.000512877,0.0006700645,0.0002652564,0.009165022,0.0000122363,0.0009165502,0.000004880814],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989422,0.0001223771,0.00009302473,0.00000720048,0.000002217933,0.000007176165,0.0006391911,0.0000024198,0.0001840499],"genre_scores_gemma":[0.9948946,0.0001183612,0.0006053865,0.00002081744,0.000003640665,0.00001451214,0.004050865,0.000005424601,0.0002862959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004296321,"threshold_uncertainty_score":0.008542657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07203925200344019,"score_gpt":0.2441943872608383,"score_spread":0.1721551352573981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}