{"id":"W4243964517","doi":"10.21203/rs.2.15923/v1","title":"Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université Laval; Canadian Food Inspection Agency","funders":"Ministère de la Défense Nationale; Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs; Government of Canada; Genome Canada; Canadian Food Inspection Agency; University of Ottawa; James Madison University","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Virology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002321125,0.0003628646,0.0003820138,0.001452776,0.0002484067,0.0004898279,0.0002033269,0.000316142,0.0009452186],"category_scores_gemma":[0.0006459028,0.000201957,0.0005544294,0.001205902,0.0001724439,0.0001655104,0.0003458811,0.0002851545,0.0003854368],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000264288,"about_ca_system_score_gemma":0.000277323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001300848,"about_ca_topic_score_gemma":0.001104465,"domain_scores_codex":[0.99978,0.00002905737,0.00002337374,0.00006586523,0.00005986126,0.00004187471],"domain_scores_gemma":[0.9993913,0.0002082644,0.0001247878,0.00003288547,0.0001367908,0.000105967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006834624,0.00007555271,0.009802269,0.0002407003,0.00005101764,0.0001847986,0.0002557866,0.0001332496,0.9843433,0.00004787762,0.00004036216,0.004141626],"study_design_scores_gemma":[0.00004691222,0.001987295,0.7677894,0.00009234732,0.0002906995,0.002010034,0.0008325519,0.001645604,0.2210624,0.0001236213,0.004089857,0.00002932359],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967232,0.000326931,0.0008411704,0.00001176684,0.000005554531,0.00003259263,0.001600197,0.00001869019,0.0004398262],"genre_scores_gemma":[0.9805556,0.0003707455,0.00554553,0.00004241509,0.00001155615,0.00007664736,0.01270159,0.00002814503,0.0006678474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001452776,"threshold_uncertainty_score":0.003162026,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06228361934338929,"score_gpt":0.3898537384759419,"score_spread":0.3275701191325526,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}