{"id":"W4244040768","doi":"10.1038/npg.els.0005091","title":"Phylogenetic Footprinting","year":2006,"lang":"en","type":"other","venue":"Encyclopedia of Life Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Footprinting; Phylogenetic tree; Biology; Phylogenetic network; Phylogenetics; Gene; Evolutionary biology; DNA footprinting; Genetics; Conserved sequence; Computational biology; Base sequence; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001420063,0.001424193,0.00142174,0.002934254,0.001286432,0.001552751,0.001976532,0.000963754,0.06877516],"category_scores_gemma":[0.001561123,0.0008874218,0.001268701,0.003316252,0.0006650007,0.001291055,0.001313115,0.002846462,0.02636797],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005209816,"about_ca_system_score_gemma":0.0006317786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001098795,"about_ca_topic_score_gemma":0.00180542,"domain_scores_codex":[0.9985122,0.0003533438,0.00008570197,0.0004048994,0.0004672776,0.0001765215],"domain_scores_gemma":[0.999033,0.0002961053,0.00007420005,0.000302872,0.000185577,0.0001083257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001182353,0.000295352,0.001741555,0.002548311,0.0002236227,0.0006428604,0.0003452245,0.002726278,0.6270886,0.03180152,0.09247537,0.238929],"study_design_scores_gemma":[0.0001577977,0.00022818,0.001581564,0.0001788953,0.0001467717,0.001072097,0.0001356213,0.01078488,0.4664401,0.01155229,0.5076391,0.00008275562],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"other","genre_scores_codex":[0.04179991,0.006565436,0.7659847,0.001534828,0.001776736,0.0008750985,0.05535718,0.02978648,0.0963197],"genre_scores_gemma":[0.1613998,0.005814227,0.654422,0.0009204397,0.0002147675,0.001131569,0.08794461,0.005480037,0.08267263],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.06877516,"threshold_uncertainty_score":0.2300758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01070612374115767,"score_gpt":0.2401894202960325,"score_spread":0.2294832965548749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}