{"id":"W4244208421","doi":"10.1007/s10482-013-0062-7","title":"Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations","year":2013,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylum; Phylogenetic tree; Clade; Biology; Evolutionary biology; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0005570114,0.001684003,0.001355854,0.0004292689,0.001400564,0.0008821957,0.0008657157,0.0007318563,0.0000967954],"category_scores_gemma":[0.0005066899,0.001315251,0.0003723225,0.0005419131,0.0009979281,0.0002555238,0.0007129436,0.0005764646,0.00001174378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008285155,"about_ca_system_score_gemma":0.0009090705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001597434,"about_ca_topic_score_gemma":0.003233964,"domain_scores_codex":[0.9941561,0.0002532471,0.000999968,0.002314805,0.0006878557,0.00158798],"domain_scores_gemma":[0.9956446,0.0006449518,0.0007546514,0.00112736,0.0008780979,0.0009503643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002857374,0.0005781887,0.02104485,0.0008599072,0.0017854,0.00007274754,0.001722304,0.0001462591,0.9371473,0.001892505,0.002188997,0.02970422],"study_design_scores_gemma":[0.08916255,0.029789,0.6066382,0.003414363,0.006231034,0.001898524,0.0179001,0.04563905,0.07515235,0.01055098,0.09768019,0.01594367],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9649116,0.008048872,0.0131508,0.001622523,0.0002276122,0.009999559,0.001570716,0.0001765674,0.0002916941],"genre_scores_gemma":[0.9859583,0.002182645,0.007301024,0.0009666851,0.0003667623,0.001523607,0.0006181663,0.0003590062,0.0007237934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8619949,"threshold_uncertainty_score":0.9998995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224117856619918,"score_gpt":0.2271474447277206,"score_spread":0.2149062661615214,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}