{"id":"W4244208421","doi":"10.1007/s10482-013-0062-7","title":"Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations","year":2013,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylum; Phylogenetic tree; Clade; Biology; Evolutionary biology; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001403715,0.000234231,0.0001468953,0.0007211373,0.0002085386,0.0004069896,0.0001456534,0.0004665676,0.002906551],"category_scores_gemma":[0.0003534961,0.0001275457,0.0003014642,0.0007042633,0.0002771703,0.0003417978,0.0003122938,0.0004505062,0.0007993391],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001463392,"about_ca_system_score_gemma":0.0001542142,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003498081,"about_ca_topic_score_gemma":0.0007596278,"domain_scores_codex":[0.9999037,0.00001634831,0.00001007154,0.00002947006,0.00002039732,0.00002004114],"domain_scores_gemma":[0.9996722,0.00006409871,0.00009563111,0.00003687632,0.00007808624,0.00005317391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004536379,0.00005277477,0.03012697,0.0002007542,0.00003107769,0.000316738,0.0002631556,0.0002470464,0.9290996,0.001319831,0.0004773333,0.03741093],"study_design_scores_gemma":[0.00005024684,0.0008295525,0.8386955,0.0002115477,0.0002408784,0.004750574,0.001174833,0.003980538,0.1047045,0.004190746,0.04109479,0.00007626713],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780685,0.005440576,0.007083337,0.0006520154,0.0001326169,0.00004218861,0.002451168,0.00008933416,0.006040258],"genre_scores_gemma":[0.9781582,0.00241947,0.01156977,0.0002881037,0.00006943889,0.00004779908,0.004260958,0.00002290461,0.003163425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002906551,"threshold_uncertainty_score":0.009723425,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224117856619918,"score_gpt":0.2271474447277206,"score_spread":0.2149062661615214,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}