{"id":"W4244836308","doi":"10.7287/peerj.6142v0.2/reviews/2","title":"Peer Review #2 of \"Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus (v0.2)\"","year":2019,"lang":"en","type":"peer-review","venue":"","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"University of Illinois at Urbana-Champaign","keywords":"Sequence (biology); Computer science; Virology; Computational biology; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0143104,0.0009622216,0.001529954,0.004891328,0.003782585,0.006838027,0.002401997,0.002659579,0.2536556],"category_scores_gemma":[0.1035192,0.0006033326,0.00124615,0.002189422,0.001892522,0.003687916,0.004420134,0.002165255,0.20624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001714714,"about_ca_system_score_gemma":0.01060967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003524214,"about_ca_topic_score_gemma":0.007402912,"domain_scores_codex":[0.9835724,0.003094525,0.001562607,0.001062038,0.009893839,0.0008144793],"domain_scores_gemma":[0.8216097,0.01372581,0.004039232,0.01012814,0.1397009,0.0107962],"domain_codex":null,"domain_gemma":"evaluation","domain_candidate":"evaluation","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002919099,0.00001193749,0.0003112423,0.0005768572,0.00001691396,0.0001468194,0.00009672045,0.00002834154,0.0003603974,0.0007942778,0.9394167,0.05821051],"study_design_scores_gemma":[0.00001251066,0.00001201662,0.0007511051,0.0002843415,0.000009967403,0.0001785595,0.00009988105,0.0001249373,0.0002976863,0.0007698394,0.9974447,0.00001430859],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"editorial","genre_gemma":"other","genre_scores_codex":[0.00681579,0.02004865,0.01992298,0.1685661,0.4284709,0.005908929,0.009079375,0.006833265,0.334354],"genre_scores_gemma":[0.0293224,0.01872814,0.01693168,0.01389863,0.07882109,0.00154849,0.01097208,0.004892734,0.8248848],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.9856896,"threshold_uncertainty_score":0.8485627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3469834568986649,"score_gpt":0.4830766383669048,"score_spread":0.1360931814682398,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}