{"id":"W4245712741","doi":"10.3389/fimmu.2020.02057","title":"Antigenic Variability","year":2020,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Epitope; Immunodominance; Antigen; Biology; Virology; Antibody; Antigenic variation; Immune system; Computational biology; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001583722,0.0001194539,0.000189055,0.00003529161,0.00003480211,0.00001081873,0.0002778638,0.0001674726,0.00002252519],"category_scores_gemma":[0.0001553289,0.0001178574,0.00006647254,0.000132982,0.00006771311,0.000005119074,0.0001584348,0.0001405212,0.00001547111],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001281839,"about_ca_system_score_gemma":0.00005063188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006181568,"about_ca_topic_score_gemma":0.000001198038,"domain_scores_codex":[0.9991681,0.00006726687,0.0002531385,0.0002281406,0.00004253814,0.0002408128],"domain_scores_gemma":[0.9995908,0.000004504056,0.00005785123,0.0002868799,0.0000235443,0.00003638124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001447836,0.0003340905,0.3155642,0.0001528223,0.0007255872,0.0000113537,0.001840959,0.0004042713,0.5380136,0.001724321,0.08947712,0.05030378],"study_design_scores_gemma":[0.006172133,0.001988804,0.1437893,0.00002297712,0.00004955683,0.00005770062,0.002884098,0.009838188,0.1621884,0.00259227,0.6689855,0.001431193],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9405991,0.003236812,0.05052279,0.001069508,0.0007464715,0.0002505455,0.000008963037,0.00002474891,0.003541028],"genre_scores_gemma":[0.9882585,0.0004607062,0.01038473,0.000625932,0.00008607496,0.00001502721,0.00007129502,0.00001429032,0.00008338722],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5795084,"threshold_uncertainty_score":0.4806086,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009240679898204415,"score_gpt":0.2063776872155001,"score_spread":0.1971370073172957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}