{"id":"W4245874147","doi":"10.32920/14640363","title":"Widespread acquisition of antimicrobial resistance among Campylobacter isolates from UK retail poultry and evidence for clonal expansion of resistant lineages","year":2021,"lang":"en","type":"preprint","venue":"","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University","funders":"University of Oxford; Food Standards Agency; Wellcome Trust","keywords":"Campylobacter; Biology; Antibiotic resistance; Multilocus sequence typing; Antimicrobial; Tetracycline; Erythromycin; Campylobacter coli; Microbiology; Campylobacteriosis; Population; Campylobacter jejuni; Ciprofloxacin; Lineage (genetic); Carriage; Antibiotics; Genetics; Genotype; Bacteria; Gene; Geography; Environmental health; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002854695,0.0002340711,0.0002816036,0.001133337,0.0003499879,0.0006802191,0.0002199054,0.0003984249,0.002053065],"category_scores_gemma":[0.001449629,0.0002676201,0.0001432111,0.0009298584,0.0004450243,0.0002652943,0.0005700684,0.0002727243,0.0003193619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003426013,"about_ca_system_score_gemma":0.0001826792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01618427,"about_ca_topic_score_gemma":0.02577225,"domain_scores_codex":[0.9993188,0.000113153,0.000100358,0.000213597,0.0001609187,0.00009320077],"domain_scores_gemma":[0.9980618,0.0003383316,0.0008376064,0.0001172537,0.0004375861,0.0002073026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002127476,0.00002815986,0.9684946,0.00008713761,0.00002318705,0.0007913536,0.0008927878,0.00004835875,0.02327254,0.00001369379,0.0001205278,0.006014975],"study_design_scores_gemma":[0.00000299412,0.0001377515,0.9969297,0.00001849467,0.00001083837,0.001270932,0.0005229827,0.00004433524,0.0007873534,0.00000597416,0.0002647099,0.000003837453],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992561,0.0002249965,0.00008887972,0.00001784671,0.000001675369,0.00000792023,0.00013842,0.000002190698,0.0002619333],"genre_scores_gemma":[0.9993252,0.0001247387,0.0001291841,0.000018941,0.000002599302,0.00000475562,0.0001876408,0.000001489443,0.0002053556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01618427,"threshold_uncertainty_score":0.03218013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0503176082959147,"score_gpt":0.2711736306910104,"score_spread":0.2208560223950957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}