{"id":"W4246081614","doi":"10.1177/117693430700300012","title":"Phylogenetic Study of the Evolution of PEP-Carboxykinase","year":2007,"lang":"en","type":"article","venue":"Evolutionary Bioinformatics","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"GTP'; Phosphoenolpyruvate carboxykinase; Biochemistry; Biology; Nucleotide; Sequence motif; Homology (biology); Enzyme; Phylogenetic tree; Conserved sequence; Phylogenetics; Peptide sequence; Sequence alignment; Amino acid; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003165846,0.0001139009,0.0001300059,0.00005960953,0.00007617219,0.000002446122,0.000293003,0.00008948738,0.000007171014],"category_scores_gemma":[0.00009199952,0.00008535436,0.00008475934,0.0002236965,0.00009901213,0.000005574193,0.000176132,0.00006032854,0.000002133657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003679241,"about_ca_system_score_gemma":0.0001492265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004413884,"about_ca_topic_score_gemma":0.00004559045,"domain_scores_codex":[0.9989564,0.00002414775,0.0004572276,0.000108051,0.0002711132,0.0001830389],"domain_scores_gemma":[0.999054,0.00001384278,0.0002814257,0.0004384426,0.0001682232,0.00004406265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002018698,0.001098312,0.01436924,0.0001969873,0.000112275,8.578936e-7,0.0009860618,0.000625448,0.9790063,0.001514084,0.0002500966,0.001638485],"study_design_scores_gemma":[0.001587986,0.002424104,0.07801799,0.00006681224,0.0001103058,0.00005449941,0.0107316,0.003181644,0.9009597,0.001057322,0.001479898,0.0003281182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850239,0.000258136,0.01224046,0.00001104408,0.0001835578,0.0003619545,0.00002366885,0.000005986801,0.00189127],"genre_scores_gemma":[0.9985089,0.00001787185,0.001279548,0.00002333816,0.00004457228,0.000006354145,0.000009993646,0.000008504082,0.0001008908],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07804658,"threshold_uncertainty_score":0.348065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005702122670716871,"score_gpt":0.2221034125743507,"score_spread":0.2164012899036338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}