{"id":"W4246185869","doi":"10.21203/rs.2.10611/v1","title":"Comparative Genomics of Multidrug-Resistant Enterococcus spp. isolated from Wastewater Treatment Plants","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Microbial Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Ontario; Toronto Metropolitan University; Queen's University; Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"","keywords":"Enterococcus; Multiple drug resistance; Biology; Wastewater; Genomics; Biotechnology; Microbiology; Genetics; Drug resistance; Environmental science; Genome; Gene; Antibiotics; Environmental engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001778166,0.0002919714,0.0005166179,0.0001142549,0.0000866404,0.00004723853,0.0004830653,0.0003698779,0.00008624055],"category_scores_gemma":[0.00001563186,0.0002449715,0.0001956676,0.00006275536,0.0001398852,0.000002241201,0.0008283384,0.0003260325,0.0001585644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008645879,"about_ca_system_score_gemma":0.0002905635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001331973,"about_ca_topic_score_gemma":0.0002368203,"domain_scores_codex":[0.9979569,0.0002846751,0.0003826004,0.0007271009,0.0002448129,0.0004038978],"domain_scores_gemma":[0.9983214,0.00004957071,0.000161287,0.001099272,0.0002451189,0.0001233537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005319479,0.0003005172,0.0003112439,0.0001012265,0.0002765516,0.000002627583,0.0005721069,0.000355263,0.9954166,0.000007477061,0.001934485,0.0001899825],"study_design_scores_gemma":[0.001026859,0.0003777799,0.002621778,0.0001749614,0.00003411096,8.507704e-7,0.0004295492,0.0004567304,0.9352744,0.00008242642,0.05924857,0.000271968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883281,0.002446045,0.0001479169,0.00005273468,0.0001336912,0.001515519,0.006930843,0.000009531347,0.0004356169],"genre_scores_gemma":[0.9918645,0.002047546,0.0004285776,0.000008326157,0.0002444435,0.00018033,0.004222922,0.00003476395,0.0009686063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06014216,"threshold_uncertainty_score":0.9989646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05358877455694766,"score_gpt":0.3614032912996132,"score_spread":0.3078145167426655,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}