{"id":"W4246679828","doi":"10.21203/rs.3.rs-32565/v2","title":"Metatranscriptomic analyses reveal ruminal pH regulates fiber degradation and fermentation by shifting the microbial community and gene expression of carbohydrate-active enzymes","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture; Alberta Livestock and Meat Agency; U.S. Department of Agriculture","keywords":"Fermentation; Enzyme; Carbohydrate; Degradation (telecommunications); Biochemistry; Chemistry; Gene; Fiber; Food science; Gene expression; Organic chemistry; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000382195,0.0007204572,0.000686878,0.0006723191,0.0002629877,0.0009434134,0.0002368648,0.0005498823,0.001249316],"category_scores_gemma":[0.0004064574,0.0003471495,0.001077174,0.0006716854,0.0002597453,0.0005532306,0.0004363302,0.0009308499,0.0005280083],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003586882,"about_ca_system_score_gemma":0.0003357854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001207888,"about_ca_topic_score_gemma":0.001708786,"domain_scores_codex":[0.9997194,0.0000224793,0.00001447367,0.0001205073,0.00005432545,0.00006873408],"domain_scores_gemma":[0.9997556,0.00006692941,0.00005039556,0.00002912602,0.00004881535,0.00004913346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000440025,0.00002744488,0.003832579,0.00004415951,0.00004178623,0.00002732115,0.00004408058,0.00009778268,0.9927729,0.00006779277,0.00003695716,0.002567165],"study_design_scores_gemma":[0.00006133209,0.0007513898,0.4668919,0.00004650325,0.0003598024,0.0003934835,0.0006510677,0.007629897,0.5191312,0.00141833,0.00258867,0.00007650225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864765,0.001276829,0.005918454,0.0002029313,0.00006453603,0.00002971561,0.005161483,0.00009104085,0.0007785084],"genre_scores_gemma":[0.9854581,0.0009207602,0.006005725,0.000234759,0.00004781679,0.00005889558,0.005261859,0.00009536368,0.001916789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001249316,"threshold_uncertainty_score":0.004179358,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.127616074820958,"score_gpt":0.3686404901060876,"score_spread":0.2410244152851296,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}