{"id":"W4246953945","doi":"10.21203/rs.2.18496/v1","title":"Comparison of Accelerate PhenoTest™ BC Kit vs. MALDI-TOF MS/VITEK®2 System for the Rapid Identification and Antimicrobial Susceptibility Testing of Gram-negative Bacilli Causing Bloodstream Infections","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"University of Calgary","keywords":"Bacilli; Antimicrobial; Microbiology; Bloodstream infection; Identification (biology); Gram; Medicine; Biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003102765,0.0002917094,0.0005827319,0.0001891525,0.0004649006,0.0002514189,0.0003980274,0.000422571,0.00001773736],"category_scores_gemma":[0.004428086,0.0002619596,0.0002062364,0.0003787029,0.0005454248,0.0000177465,0.0007930712,0.0005692723,0.000002940131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001073434,"about_ca_system_score_gemma":0.0004289715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001827322,"about_ca_topic_score_gemma":0.0004790979,"domain_scores_codex":[0.9964671,0.000751878,0.001051112,0.0009262488,0.0003888053,0.0004148801],"domain_scores_gemma":[0.9938632,0.001140338,0.0007970628,0.00123004,0.002876229,0.00009317957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001320581,0.0003147825,0.09512678,0.004590345,0.000138321,2.041677e-7,0.0004302204,0.001065606,0.8953984,0.00003023983,0.0001731399,0.002599882],"study_design_scores_gemma":[0.0007919284,0.0005602762,0.1090846,0.001030837,0.0001427446,0.000006113181,0.001877934,0.009373405,0.87657,0.00007934636,0.0001302198,0.0003526291],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923499,0.0002649712,0.003233851,0.0001765159,0.0003915425,0.002774992,0.0006965754,0.00003136618,0.00008026147],"genre_scores_gemma":[0.9976231,0.0000749071,0.001116755,0.000004270683,0.0002384394,0.0001390506,0.0006749655,0.0000413509,0.00008719989],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01882846,"threshold_uncertainty_score":0.9999833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1079374797759263,"score_gpt":0.3974531075132727,"score_spread":0.2895156277373464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}