{"id":"W4247847423","doi":"10.21203/rs.2.14709/v5","title":"Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Government of Canada; Canadian Field Crop Research Alliance; Genome Canada; Syngenta Canada; Saskatchewan Pulse Growers; Grain Farmers of Ontario; Génome Québec","keywords":"Sclerotinia sclerotiorum; Genome; Biology; Genome-wide association study; Genetics; Resistance (ecology); Association mapping; Computational biology; Gene; Botany; Genotype; Single-nucleotide polymorphism; Agronomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006408084,0.0002645376,0.0003025791,0.0009176164,0.0002426144,0.00026121,0.0001777997,0.0002042446,0.001172779],"category_scores_gemma":[0.0003762329,0.0001319529,0.000421597,0.000884944,0.0001140458,0.00007223953,0.0002344582,0.0002402158,0.0002588328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001831324,"about_ca_system_score_gemma":0.0002987814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002455911,"about_ca_topic_score_gemma":0.006933643,"domain_scores_codex":[0.9997358,0.00005071189,0.00002103151,0.0001213982,0.000043378,0.00002776083],"domain_scores_gemma":[0.9997432,0.00009344509,0.00006844821,0.0000232749,0.00003174083,0.00004003794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008730338,0.0001245626,0.1277783,0.0003165327,0.0006477966,0.0004875658,0.0002380519,0.001280281,0.8485502,0.0002017467,0.0004657208,0.0190362],"study_design_scores_gemma":[0.00006670863,0.0002106314,0.970207,0.00002422477,0.0004180505,0.0005584146,0.00009634336,0.004078334,0.02160381,0.0001602363,0.002558163,0.00001816341],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935116,0.0003055166,0.0031681,0.00003362229,0.000007230269,0.0000168283,0.002557312,0.00005507257,0.0003446324],"genre_scores_gemma":[0.9850316,0.000166905,0.006388028,0.00003073665,0.000006938778,0.00002542586,0.007828955,0.00002046432,0.0005009544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002455911,"threshold_uncertainty_score":0.00488317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1902425768876072,"score_gpt":0.3276578341665076,"score_spread":0.1374152572789004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}