{"id":"W4249657631","doi":"10.21203/rs.3.rs-364004/v1","title":"Dynamic Subspecies Population Structure of Vibrio Cholerae in Dhaka, Bangladesh","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Vibrio cholerae; Subspecies; Cholera; Population; Geography; Microbiology; Biology; Bacteria; Medicine; Zoology; Environmental health; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002774471,0.0002521317,0.0003954189,0.001677889,0.0008186487,0.0008399988,0.0006190827,0.0004886623,0.002232435],"category_scores_gemma":[0.001047626,0.0004115673,0.0002377849,0.002382406,0.0007790219,0.0005423124,0.0009246832,0.0003788502,0.0006639982],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002431727,"about_ca_system_score_gemma":0.00133928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1925221,"about_ca_topic_score_gemma":0.1827768,"domain_scores_codex":[0.9996164,0.00005415024,0.00003255794,0.0001316954,0.00004602408,0.0001192721],"domain_scores_gemma":[0.999486,0.0000912801,0.000115068,0.00003648303,0.0001621135,0.0001089253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000255155,0.00002201587,0.9836251,0.00005570656,0.00007724345,0.0002618945,0.002853033,0.000792889,0.006100818,0.0006332758,0.0004187893,0.0049042],"study_design_scores_gemma":[0.000005508502,0.00002773022,0.9962124,0.000009670433,0.00001187477,0.0001107475,0.002738244,0.0002379807,0.00009494226,0.00006533674,0.0004732939,0.00001237261],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997425,0.0001182264,0.0000803669,0.00007515377,0.000001866421,0.00001036115,0.001187012,0.000004454962,0.001097607],"genre_scores_gemma":[0.9988546,0.00008801151,0.00004540756,0.00001162301,0.000001111102,0.000009502405,0.0005879331,0.000001795619,0.0003999819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1925221,"threshold_uncertainty_score":0.382803,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0249035697061668,"score_gpt":0.366173325991231,"score_spread":0.3412697562850642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}